Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq8 95.1 3e-14 seq5 93.3 1e-13 seq6 86.0 1e-11 >seq8 Length=1023559 Score = 95.1 bits (104), Expect = 3e-14 Identities = 183/267 (69%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 326077 GTCGGTCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACC 326136 ||||| ||||||||||| ||||| || |||||| ||| ||||| || || Sbjct 35349 GTCGGCCATGATCATCAGGCTGCCGTAGCGGAGCGAGTCGGTGCTCGTGTACGTCTTGCC 35290 Query 326137 GGTTTGAAGGCCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGC---T 326193 || | ||| | || || |||| ||| ||| || |||||| || || || | Sbjct 35289 CTGCTGCAAGCCCATGATCTGCTTGATCGCCTGGATCTCGGCGTTCT-CGAGAAGCGCCT 35231 Query 326194 TGCCACGGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCT 326253 |||| || ||| ||||| ||||| | || ||||| || || ||||| || || || | Sbjct 35230 TGCC--GGTTGCCTCGCGAACGTTGAGGAGCTTTCCGCGGAGCGGGAAGACACCGTAGTT 35173 Query 326254 CTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGT 326313 ||||||||||| |||| || || | || || || | | || || || ||||| || Sbjct 35172 GTCGCGACCGACGACGGCGAGACCCGAGACGGCGAGCGCCTTGGCCGAGTCTCCCTCGGT 35113 Query 326314 CAGAATGAGAGTGCACATTTTGCTGTT 326340 ||| ||||| |||||| | |||| ||| Sbjct 35112 CAGGATGAGCGTGCACTTGTTGCCGTT 35086 >seq5 Length=1227376 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | ||| || || || | ||| || || || || ||||||||| | Sbjct 830657 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 830598 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || |||||||||| ||||| || | || Sbjct 830597 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 830538 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || ||||| || || | || ||| || ||| Sbjct 830537 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACT 830478 Query 288427 TCGAGCGTG 288435 ||||||| Sbjct 830477 GTGAGCGTG 830469 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || | || | ||| || || || ||||| ||||| | Sbjct 829494 CCACCGCGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGAATATTGTAGTCCGAA 829435 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||||||||| || | || || || |||||||||| ||||| || | || Sbjct 829434 AGCGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 829375 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || ||||| || || | || ||| || || Sbjct 829374 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGACGACTCGACC 829315 Query 288427 TCGAGCGTGATC 288438 ||||| |||||| Sbjct 829314 TCGAGGGTGATC 829303 >seq6 Length=1203005 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| | || | ||||| || | || ||| |||||||| || || || | Sbjct 882649 CCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGGATGTTGTAATCCGAC 882708 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||||||||| || | || || || |||||||||| ||||| || ||| Sbjct 882709 AAGGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 882768 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || ||||| || || | ||| ||| || || Sbjct 882769 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGACGACTCAACC 882828 Query 288427 TCGAGCGTGATC 288438 ||||| |||||| Sbjct 882829 TCGAGGGTGATC 882840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653598940934