Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq8 95.1 3e-14
seq5 93.3 1e-13
seq6 86.0 1e-11
>seq8
Length=1023559
Score = 95.1 bits (104), Expect = 3e-14
Identities = 183/267 (69%), Gaps = 6/267 (2%)
Strand=Plus/Minus
Query 326077 GTCGGTCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACC 326136
||||| ||||||||||| ||||| || |||||| ||| ||||| || ||
Sbjct 35349 GTCGGCCATGATCATCAGGCTGCCGTAGCGGAGCGAGTCGGTGCTCGTGTACGTCTTGCC 35290
Query 326137 GGTTTGAAGGCCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGC---T 326193
|| | ||| | || || |||| ||| ||| || |||||| || || || |
Sbjct 35289 CTGCTGCAAGCCCATGATCTGCTTGATCGCCTGGATCTCGGCGTTCT-CGAGAAGCGCCT 35231
Query 326194 TGCCACGGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCT 326253
|||| || ||| ||||| ||||| | || ||||| || || ||||| || || || |
Sbjct 35230 TGCC--GGTTGCCTCGCGAACGTTGAGGAGCTTTCCGCGGAGCGGGAAGACACCGTAGTT 35173
Query 326254 CTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGT 326313
||||||||||| |||| || || | || || || | | || || || ||||| ||
Sbjct 35172 GTCGCGACCGACGACGGCGAGACCCGAGACGGCGAGCGCCTTGGCCGAGTCTCCCTCGGT 35113
Query 326314 CAGAATGAGAGTGCACATTTTGCTGTT 326340
||| ||||| |||||| | |||| |||
Sbjct 35112 CAGGATGAGCGTGCACTTGTTGCCGTT 35086
>seq5
Length=1227376
Score = 93.3 bits (102), Expect = 1e-13
Identities = 134/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||| | ||| || || || | ||| || || || || ||||||||| |
Sbjct 830657 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 830598
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|||||||| ||||| || | || || || |||||||||| ||||| || | ||
Sbjct 830597 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 830538
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || || || ||||| || || | || ||| || |||
Sbjct 830537 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACT 830478
Query 288427 TCGAGCGTG 288435
|||||||
Sbjct 830477 GTGAGCGTG 830469
Score = 89.7 bits (98), Expect = 1e-12
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| || | ||| || | || | ||| || || || ||||| ||||| |
Sbjct 829494 CCACCGCGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGAATATTGTAGTCCGAA 829435
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|||||||||||||| || | || || || |||||||||| ||||| || | ||
Sbjct 829434 AGCGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 829375
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || || || ||||| || || | || ||| || ||
Sbjct 829374 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGACGACTCGACC 829315
Query 288427 TCGAGCGTGATC 288438
||||| ||||||
Sbjct 829314 TCGAGGGTGATC 829303
>seq6
Length=1203005
Score = 86.0 bits (94), Expect = 1e-11
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| | || | ||||| || | || ||| |||||||| || || || |
Sbjct 882649 CCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGGATGTTGTAATCCGAC 882708
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||||||||| || | || || || |||||||||| ||||| || |||
Sbjct 882709 AAGGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 882768
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || || || ||||| || || | ||| ||| || ||
Sbjct 882769 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGACGACTCAACC 882828
Query 288427 TCGAGCGTGATC 288438
||||| ||||||
Sbjct 882829 TCGAGGGTGATC 882840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179653598940934
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |