Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq21 95.1 3e-14 seq8 91.5 3e-13 seq5 86.0 1e-11 seq1 84.2 5e-11 >seq21 Length=276254 Score = 95.1 bits (104), Expect = 3e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 243493 GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATT 243552 |||| || || ||| | ||||| || || | ||| | |||||| | ||||| | Sbjct 32291 GTCACCCAGATTATCGCCGAAGCCGTCGAGATCGAGCAAGAATTCCTGACGGACGCCTTG 32232 Query 243553 CCATGCCGGCTT-ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGC 243611 || | |||||| || ||||||||| | |||||| ||||||||||||| ||||| || Sbjct 32231 CCC-GTCGGCTTGATCGGCATGAACGCCACCCTCATGCGACAGTACATCGAGTTCGTCGC 32173 Query 243612 CGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGC 243671 ||||| | | ||||||| || | || || ||||||| || ||||||| || | Sbjct 32172 GGACCGATTGCTTGTCGCGCTCGGGAACGACAAGCTGTACAATGCCGAGAACCCGTTCGA 32113 Query 243672 CTTTATGGAGCTCATTTCG 243690 |||||||||| | || ||| Sbjct 32112 CTTTATGGAGATGATCTCG 32094 >seq8 Length=1023559 Score = 91.5 bits (100), Expect = 3e-13 Identities = 182/267 (68%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 298198 GTCGGTCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACC 298257 ||||| ||||||||||| ||||| || |||||| ||| ||||| || || Sbjct 35349 GTCGGCCATGATCATCAGGCTGCCGTAGCGGAGCGAGTCGGTGCTCGTGTACGTCTTGCC 35290 Query 298258 GGTTTGAAGGCCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGC---T 298314 || | ||| | || || |||| ||| ||| || |||||| || || || | Sbjct 35289 CTGCTGCAAGCCCATGATCTGCTTGATCGCCTGGATCTCGGCGTTCT-CGAGAAGCGCCT 35231 Query 298315 TGCCACGGATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCT 298374 |||| || ||| ||||| || || | || ||||| || || ||||| || || || | Sbjct 35230 TGCC--GGTTGCCTCGCGAACGTTGAGGAGCTTTCCGCGGAGCGGGAAGACACCGTAGTT 35173 Query 298375 CTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGT 298434 ||||||||||| |||| || || | || || || | | || || || ||||| || Sbjct 35172 GTCGCGACCGACGACGGCGAGACCCGAGACGGCGAGCGCCTTGGCCGAGTCTCCCTCGGT 35113 Query 298435 CAGAATGAGAGTGCACATTTTGCTGTT 298461 ||| ||||| |||||| | |||| ||| Sbjct 35112 CAGGATGAGCGTGCACTTGTTGCCGTT 35086 >seq5 Length=1227376 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 243486 CGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGA 243545 |||||||||| | | |||||| || || || || | ||| |||| ||| | ||| Sbjct 777697 CGAAACGGTCGAGCGCATCATCCGCGAGGCGGTCGAGATCGAGCAGGAGTTCCTCACCGA 777638 Query 243546 CGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATT 243605 || | || | ||| || ||||||||| || |||||| | ||||||||||| || Sbjct 777637 GGCGCTCCCCGTCAAGCTCATCGGCATGAACAGCGATCTCATGTGCCAGTACATCGAGTT 777578 Query 243606 CGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCC 243665 ||| || ||||| | | |||||||| || | ||||| | ||| || ||||||| Sbjct 777577 CGTGGCAGACCGATTGCTTATCGCGCTCGGCAACGAGAAGATCTACCACAAGGAGAACCC 777518 Query 243666 CTTTGCCTTTATGGA 243680 || | ||||||||| Sbjct 777517 GTTCGACTTTATGGA 777503 >seq1 Length=1516062 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 334179 GAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCC 334238 |||||||| || || | ||| ||||| | || |||||||| || || || || || | | Sbjct 78674 GAGGGGAAGCCCTCGACCTGGCCGTTGTCGATCGCGCGCATGAGGGTCGACTTGCCGGAC 78733 Query 334239 CCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAG 334279 ||||| | ||||| ||||||||||||| ||||||||| || Sbjct 78734 CCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAG 78774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879251075550