Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq25 176 5e-39 seq16 91.5 2e-13 >seq25 Length=115453 Score = 176 bits (194), Expect = 5e-39 Identities = 489/739 (66%), Gaps = 17/739 (2%) Strand=Plus/Minus Query 114590 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 114649 || |||||||| |||||| | || | |||||||| |||| || ||| || || | | Sbjct 3737 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTAC 3678 Query 114650 CAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 114708 |||| | || | ||| || | ||| ||||| || ||||||| ||| ||||| | | Sbjct 3677 CAGAGCTTCTG-GGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAA 3619 Query 114709 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 114768 || | | ||||| || || | |||| ||| || ||||||| | |||||||| Sbjct 3618 CAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGCAGAA 3559 Query 114769 GAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 ||| | ||| | || || ||| ||||||| |||||||||||| || |||||||| || Sbjct 3558 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGC 3499 Query 114829 TGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 114888 |||| | || || ||| | || || | || || || || | || | || Sbjct 3498 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 3439 Query 114889 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACG 114945 || | ||| || ||||||||||| || ||||| | |||| | ||| || Sbjct 3438 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 3379 Query 114946 ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACC 115005 || |||||| || || | ||| ||| || | ||||| ||||| || ||||| || Sbjct 3378 GCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 3319 Query 115006 ATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGGATG 115063 | || | ||| || || || ||| |||||| | | || | || | ||||| Sbjct 3318 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCC--GGTCGCGCGGATGTTGTGGATC 3261 Query 115064 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 115123 | ||| || || || ||| ||| ||||| |||||||| | |||| || ||||| Sbjct 3260 GAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 3201 Query 115124 ATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTT 115183 || || ||||||||||| |||| | | || |||||||| ||| | || || Sbjct 3200 ATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGC 3141 Query 115184 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTT 115242 || || || ||||||||||| || || | ||||| | || |||| | ||||| Sbjct 3140 GGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGT-AAAGTACCGCTCCGACATGAG 3082 Query 115243 ATCGTAGGTCTCCAAGACGGCGGG---AATGTCTTCCCCGTGAATACCGATCGAGACCCG 115299 | ||| ||||| || ||| | |||||| || ||||| || |||| || ||| || Sbjct 3081 GTTGTACGTCTC---GATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACG 3025 Query 115300 CATAAACATGTATTGGGGT 115318 ||| | ||||| || ||| Sbjct 3024 CATGAGCATGTGCTGCGGT 3006 >seq16 Length=742613 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 8796 GGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGG 8855 || |||||| ||||| || | |||||||||||||| ||||| || || | ||||||| Sbjct 591524 GGCAACCTCGACGCCAAGCGCGACTGGGGACACGCTCGCGACTACGTCGAGGGCATGTGG 591465 Query 8856 CTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 8915 | | | || || || || || | || || | |||| ||||||| || ||||| ||| || Sbjct 591464 CGCATGCTCCAGCAGGACCAGCCCGATGACTTTGTCCTCGCGACTGGCGAGACCCACCCC 591405 Query 8916 GTCAGGGAGTTCGTTGAG 8933 ||| | ||||| || ||| Sbjct 591404 GTCCGCGAGTTTGTCGAG 591387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353204253240