Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq15 91.5 2e-13
seq6 89.7 6e-13
seq5 89.7 6e-13
>seq15
Length=767120
Score = 91.5 bits (100), Expect = 2e-13
Identities = 116/157 (74%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| ||||| ||||| |||| ||||| || |||| || |||||||| || || ||
Sbjct 225814 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 225873
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 225874 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 225932
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
| | | |||||| ||| || || |||| |||||
Sbjct 225933 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 225969
>seq6
Length=1203005
Score = 89.7 bits (98), Expect = 6e-13
Identities = 115/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
|||||||| || |||||||| | || || || |||| || |||||||| || |||||
Sbjct 882685 TCCTTTTGGATGTTGTAATCCGACAAGGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAG 882744
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
|| | ||||||||||||| || | || |||||||||| ||| || |||| |||
Sbjct 882745 ATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 882803
Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
| | | ||||||| ||| || || |||| |||||
Sbjct 882804 GTCAATCGTGTCGGACGACTCAACCTCGAGGGTGAT 882839
>seq5
Length=1227376
Score = 89.7 bits (98), Expect = 6e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
|||||| | | ||||| ||| | || | || ||| || || || |||||||| |
Sbjct 829185 ACCTCCGCGGAGACGCAGCACGAGGTGGAGCGTCGACTCTTTCTGGATGTTGTAATCCGA 829126
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || |||| || |||||||| || ||||| ||||| ||||||||||||| ||
Sbjct 829125 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGG 829066
Query 42101 CACGCTCTCCTTGTCCATGATTTT 42124
| || |||||||||| ||| ||
Sbjct 829065 GATGCCCTCCTTGTCCTGGATCTT 829042
Score = 89.7 bits (98), Expect = 6e-13
Identities = 130/181 (72%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | |||||| |||| || |||||| ||||||||||| || | || || || |
Sbjct 829483 ACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGAATATTGTAGTCCGAAAGCGTGCGTCC 829424
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || |||||||| || ||||| || | ||||||||||| | || | || ||||||
Sbjct 829423 GTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTT 829364
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
|||| ||| || |||| ||| | | | |||||| ||| || || |||| ||||
Sbjct 829363 GTCCTGGATCTTGGCCTTGA-CGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGA 829305
Query 42172 T 42172
|
Sbjct 829304 T 829304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212440121520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |