Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq6 100 3e-16 seq5 96.9 3e-15 seq15 91.5 1e-13 >seq6 Length=1203005 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || |||||||| || | || || || | |||||||| ||||| ||||||||||| | Sbjct 882649 CCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGGATGTTGTAATCCGAC 882708 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| ||||||||||| || || | || | ||||||||||||||||| Sbjct 882709 AAGGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 882768 Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359 || || || || || || || || Sbjct 882769 ATGCCCTCCTTGTCCTGGATCTT 882791 >seq5 Length=1227376 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | | |||||| || || | |||||| || || |||||||| || || | Sbjct 830657 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 830598 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| ||||||||||||||||| | || | ||||||||||| || ||| Sbjct 830597 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 830538 Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359 || || || || || || || || Sbjct 830537 ATGCCCTCCTTGTCCTGGATCTT 830515 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||||| || || | |||||| ||||| || ||||||||||| | Sbjct 829185 ACCTCCGCGGAGACGCAGCACGAGGTGGAGCGTCGACTCTTTCTGGATGTTGTAATCCGA 829126 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || |||| || |||||||| || || | ||||| ||||||||||||||||| Sbjct 829125 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGG 829066 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 || || || || || || || || Sbjct 829065 GATGCCCTCCTTGTCCTGGATCTT 829042 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | |||||| | || | |||||| || || ||||| ||||| || | Sbjct 829495 ACCACCGCGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGAATATTGTAGTCCGA 829436 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| ||||||||||||||||| | || | ||||||||||| || || Sbjct 829435 AAGCGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGG 829376 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 ||| || || || || || || || Sbjct 829375 AATGCCCTCCTTGTCCTGGATCTT 829352 >seq15 Length=767120 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| ||||| || || ||||||||||| || | | ||||| |||| Sbjct 225794 AGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCC 225853 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | ||||| ||||||||||| || || || || || || || Sbjct 225854 TCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 225913 Query 64352 TGTATTTT 64359 || || || Sbjct 225914 TGGATCTT 225921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644468985320