Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq25 241 1e-58 >seq25 Length=115453 Score = 241 bits (266), Expect = 1e-58 Identities = 423/615 (69%), Gaps = 6/615 (1%) Strand=Plus/Plus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||| | |||||| || || ||| ||||||||| ||| | || |||| ||| || Sbjct 2941 TACTTCGGCTTCAAGACGCTCGAGCGGTCGTACCTGCTCCGCCTCGACGGCAAGGTGGCC 3000 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 ||||||||||| || |||| ||||| ||||| |||| || |||||| ||||||| | Sbjct 3001 GAGCGACCGCAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAG 3060 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTA---TACCATGGCCACCCCG 93900 | | | | | || |||| ||| | |||| ||| ||| | ||| Sbjct 3061 CGCGCGATCGAGACGTACAACCTCATGTCGGA---GCGGTACTTTACGCACGCCTCGCCG 3117 Query 93901 ACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAAC 93960 || || |||||||| || || ||| || ||| | || ||||| ||||| | |||| Sbjct 3118 ACGCTCTTCAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATG 3177 Query 93961 AAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAA 94020 |||| |||||| ||| || || | ||||| |||||| || ||| |||||| || Sbjct 3178 AAGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAG 3237 Query 94021 TACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGC 94080 || || || ||||| || ||||| || | || || | || || |||||| | Sbjct 3238 ACGGCCGGCGGCATCGGTCTCTCGATCCACAACATCCGCGCGACCGGCTCGTACATCGCC 3297 Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 || || || ||| ||| |||||| || |||| |||||||| || | ||||||| | ||| Sbjct 3298 GGCACGAACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCG 3357 Query 94141 CGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCC 94200 |||||||| |||||||| || | | | ||| | ||||| |||| |||||||| Sbjct 3358 CGCTACGTCGACCAGGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCG 3417 Query 94201 TGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG 94260 |||||||| ||| | | ||| ||||||| || |||||||||||||| || || Sbjct 3418 TGGCACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTC 3477 Query 94261 AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 | || | ||| | |||| || |||||| | || ||||| || ||| | || |||||| Sbjct 3478 CGCGCGCGCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAG 3537 Query 94321 AAAAACTCCGCCTGG 94335 | ||| || |||| Sbjct 3538 CAGAACGGCGACTGG 3552 Score = 132 bits (146), Expect = 5e-26 Identities = 225/318 (71%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 95104 GCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCC 95163 || || ||||| || || || || |||||||| ||| ||||||| ||||||| || Sbjct 4461 GCACCGATGCCGACCGCGTCGACTAGCCAGATCCTCGGCTTCAACGAGGCGTTCGAGCCG 4520 Query 95164 TTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAG 95223 | ||| |||||| | |||| | | || || |||||||| || |||| ||| ||||| Sbjct 4521 TACACGTCCAACATCTACACCCGCCGTGTCCTCGCCGGCGAGTTCCAGGTCGTCAACCCC 4580 Query 95224 CACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACT 95282 ||||| || ||||| | || | | || ||||| ||| | | |||||| | Sbjct 4581 TGGCTCCTCCGCGACCTCGTCGAC-CGCGGCCTGTGGAACGACGCGATGAAGAACACGAT 4639 Query 95283 GCTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGC 95341 | ||||| ||||||||| |||||||| |||| || || || || ||||| ||| Sbjct 4640 CAT-CGCGCACAACGGCTCGATCCAGAACGTCCCCGGTATCCCTGATGAGCTCAAG-CGC 4697 Query 95342 -TCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGC 95400 |||||||||| |||||||||||| ||||| || | |||||| | | |||| |||| Sbjct 4698 ATCTACAAGACGGTGTGGGAGATCTCGCAGAAGGTCGTCATCGACCTCTCCGCCGACCGC 4757 Query 95401 GGGCCCTTCATCTGCCAG 95418 || | |||||| |||| Sbjct 4758 GGAGCGTTCATCGACCAG 4775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722872245880