Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq25 116 4e-21
seq5 96.9 3e-15
>seq25
Length=115453
Score = 116 bits (128), Expect = 4e-21
Identities = 434/662 (66%), Gaps = 25/662 (4%)
Strand=Plus/Minus
Query 153809 GCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGC 153868
||| ||||| |||| || |||| |||| || ||||||||||||||| |||
Sbjct 3645 GCGACCCTCCTTCTCATACTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTG 3586
Query 153869 GAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGT-CGGCGTTGACGCGTC 153927
||||||||| || || || | || | ||| ||| | || | ||| ||
Sbjct 3585 GAGGCCGGGTGCCTCGGCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGC-TCGACACGCT 3527
Query 153928 GCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCG 153987
|||||| || || || | |||||| || | | | ||||||||| | ||||||
Sbjct 3526 CCATGAAGAGGTCGGGAATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCT 3467
Query 153988 CGCCCATGTTGCGTTTCAGA--TTGAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAA 154044
||| ||| || | || | ||| | | | | |||||||||||||||| || || |
Sbjct 3466 TGCCGTGGTTC--TTGCGGAGGTCGAGGAACTCGA-AGATGTCGGCGTGCCACGGCTCGA 3410
Query 154045 TGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGATCGACGTGGCGCACCATAT 154101
||||| ||| | || || ||||| |||||||| ||||||| |||| | | |
Sbjct 3409 GGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGT 3350
Query 154102 TGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCT 154161
||||| | ||||| | |||||| | |||| | | | |||||| || ||| |
Sbjct 3349 TGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGT 3290
Query 154162 TGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCG-CCGTACTTTGAT 154220
|||| ||||| | | || | | || ||||||||| |||| ||| ||
Sbjct 3289 ACGAGCCGGTCGCGCGGATGTTGTGGATCGAGAGACCGATGCCGCCGGCCGT-CTTGGAG 3231
Query 154221 ATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCC 154279
||| ||||| ||| ||||| ||||||||| ||||| ||||| |
Sbjct 3230 ATGAGCGCGCACGTCTTG-AGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGT 3172
Query 154280 GAGCAAGAAACACGAACACATTTGCGGAATGCG-CGTTCCCGCCGAAAAGAGGGTGGGAC 154338
|| | ||| ||||| | | ||||| |||| ||| || || ||||| || ||
Sbjct 3171 GACGAGGAAGCACGACGAGAGCTGCGGG-TGCGGCGTGCCGGCGTTGAAGAGCGTCGGCG 3113
Query 154339 TCGCGTGCGTAAACAGTTTTTGGCTCAT-CATGCGGT---ACGTTTCGATGGCGTCTTCG 154394
||||||||||| | |||| |||| ||| |||| ||||| ||| ||
Sbjct 3112 AGGCGTGCGTAAAG----TACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCA 3057
Query 154395 ATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCG 154454
|| || |||||||| ||||||| |||||| |||||||||||||||||||| || |||||
Sbjct 3056 ATGTCGTCGCCGTGGATGCCGACCGCGACACGCATGAGCATGTGCTGCGGTCGCTCGGCC 2997
Query 154455 AC 154456
||
Sbjct 2996 AC 2995
>seq5
Length=1227376
Score = 96.9 bits (106), Expect = 3e-15
Identities = 213/311 (68%), Gaps = 9/311 (3%)
Strand=Plus/Minus
Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562
|||||| | || ||||||||||| || || ||||| ||||| || |||||| || |
Sbjct 777780 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTCGCCTGCCTCCTCTTCT-- 777723
Query 52563 ACGCGCGT-GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621
||| | | || || | | | || ||| || | |||| || ||||||||
Sbjct 777722 -CGCACCTCGAGCGCCGCCCTC-ACCCCGAAACGGTCGAGCGCATCATCCGCGAGGCGGT 777665
Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681
| ||||| ||||||| | || | ||||| || ||| |||| | |||||||||
Sbjct 777664 CGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTCCCCGTCAAGCTCATCGGCATGAACA- 777606
Query 52682 GCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC 52740
|| || ||||||| ||||||||||||| ||||| || || || | | |||| |||
Sbjct 777605 GCGATCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCGCTC-GGC 777547
Query 52741 AGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAG 52799
| | | ||| || | || || ||||| || |||||| ||| || ||| | |||
Sbjct 777546 AACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 777487
Query 52800 GGCAAGACCAA 52810
|||||||||||
Sbjct 777486 GGCAAGACCAA 777476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262071226160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |