Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq25 116 4e-21 seq5 96.9 3e-15 >seq25 Length=115453 Score = 116 bits (128), Expect = 4e-21 Identities = 434/662 (66%), Gaps = 25/662 (4%) Strand=Plus/Minus Query 153809 GCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGC 153868 ||| ||||| |||| || |||| |||| || ||||||||||||||| ||| Sbjct 3645 GCGACCCTCCTTCTCATACTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTG 3586 Query 153869 GAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGT-CGGCGTTGACGCGTC 153927 ||||||||| || || || | || | ||| ||| | || | ||| || Sbjct 3585 GAGGCCGGGTGCCTCGGCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGC-TCGACACGCT 3527 Query 153928 GCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCG 153987 |||||| || || || | |||||| || | | | ||||||||| | |||||| Sbjct 3526 CCATGAAGAGGTCGGGAATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCT 3467 Query 153988 CGCCCATGTTGCGTTTCAGA--TTGAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAA 154044 ||| ||| || | || | ||| | | | | |||||||||||||||| || || | Sbjct 3466 TGCCGTGGTTC--TTGCGGAGGTCGAGGAACTCGA-AGATGTCGGCGTGCCACGGCTCGA 3410 Query 154045 TGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGATCGACGTGGCGCACCATAT 154101 ||||| ||| | || || ||||| |||||||| ||||||| |||| | | | Sbjct 3409 GGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGT 3350 Query 154102 TGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCT 154161 ||||| | ||||| | |||||| | |||| | | | |||||| || ||| | Sbjct 3349 TGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGT 3290 Query 154162 TGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCG-CCGTACTTTGAT 154220 |||| ||||| | | || | | || ||||||||| |||| ||| || Sbjct 3289 ACGAGCCGGTCGCGCGGATGTTGTGGATCGAGAGACCGATGCCGCCGGCCGT-CTTGGAG 3231 Query 154221 ATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCC 154279 ||| ||||| ||| ||||| ||||||||| ||||| ||||| | Sbjct 3230 ATGAGCGCGCACGTCTTG-AGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGT 3172 Query 154280 GAGCAAGAAACACGAACACATTTGCGGAATGCG-CGTTCCCGCCGAAAAGAGGGTGGGAC 154338 || | ||| ||||| | | ||||| |||| ||| || || ||||| || || Sbjct 3171 GACGAGGAAGCACGACGAGAGCTGCGGG-TGCGGCGTGCCGGCGTTGAAGAGCGTCGGCG 3113 Query 154339 TCGCGTGCGTAAACAGTTTTTGGCTCAT-CATGCGGT---ACGTTTCGATGGCGTCTTCG 154394 ||||||||||| | |||| |||| ||| |||| ||||| ||| || Sbjct 3112 AGGCGTGCGTAAAG----TACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCA 3057 Query 154395 ATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCG 154454 || || |||||||| ||||||| |||||| |||||||||||||||||||| || ||||| Sbjct 3056 ATGTCGTCGCCGTGGATGCCGACCGCGACACGCATGAGCATGTGCTGCGGTCGCTCGGCC 2997 Query 154455 AC 154456 || Sbjct 2996 AC 2995 >seq5 Length=1227376 Score = 96.9 bits (106), Expect = 3e-15 Identities = 213/311 (68%), Gaps = 9/311 (3%) Strand=Plus/Minus Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562 |||||| | || ||||||||||| || || ||||| ||||| || |||||| || | Sbjct 777780 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTCGCCTGCCTCCTCTTCT-- 777723 Query 52563 ACGCGCGT-GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621 ||| | | || || | | | || ||| || | |||| || |||||||| Sbjct 777722 -CGCACCTCGAGCGCCGCCCTC-ACCCCGAAACGGTCGAGCGCATCATCCGCGAGGCGGT 777665 Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681 | ||||| ||||||| | || | ||||| || ||| |||| | ||||||||| Sbjct 777664 CGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTCCCCGTCAAGCTCATCGGCATGAACA- 777606 Query 52682 GCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC 52740 || || ||||||| ||||||||||||| ||||| || || || | | |||| ||| Sbjct 777605 GCGATCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCGCTC-GGC 777547 Query 52741 AGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAG 52799 | | | ||| || | || || ||||| || |||||| ||| || ||| | ||| Sbjct 777546 AACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 777487 Query 52800 GGCAAGACCAA 52810 ||||||||||| Sbjct 777486 GGCAAGACCAA 777476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262071226160