Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5 113 4e-20 seq21 102 8e-17 seq6 100 3e-16 seq8 86.0 6e-12 >seq5 Length=1227376 Score = 113 bits (124), Expect = 4e-20 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||||| || | ||| ||||| || ||||||||||| || Sbjct 829494 CCACCGCGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGAATATTGTAGTCCGAA 829435 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| ||||||| |||||||| || || || Sbjct 829434 AGCGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 829375 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| || | ||||||| |||||| Sbjct 829374 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCAATCGTGTCCGACGACTCGAC 829316 Query 127066 TTCGACGGT 127074 |||| ||| Sbjct 829315 CTCGAGGGT 829307 Score = 113 bits (124), Expect = 4e-20 Identities = 135/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| ||||| || ||||| || || |||| Sbjct 830657 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 830598 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| ||||||| |||||||| || || || Sbjct 830597 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 830538 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| |||| |||||||| |||||| Sbjct 830537 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCCGACGACTCGAC 830479 Query 127066 T 127066 | Sbjct 830478 T 830478 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||| | || | ||| |||||||| || || |||||||| Sbjct 829184 CCTCCGCGGAGACGCAGCACGAGGTGGAGCGTCGACTCTTTCTGGATGTTGTAATCCGAA 829125 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| || || ||| |||| | |||||||| |||||||| Sbjct 829124 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 829065 Query 127007 ATGCCCTCCTTGTCCGTGATTTT 127029 ||||||||||||||| ||| || Sbjct 829064 ATGCCCTCCTTGTCCTGGATCTT 829042 >seq21 Length=276254 Score = 102 bits (112), Expect = 8e-17 Identities = 213/314 (68%), Gaps = 15/314 (5%) Strand=Plus/Minus Query 47244 AACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG---TCTCTACTA- 47299 |||||||| |||||| | || ||||| || |||||| |||||||||| ||||| | Sbjct 32381 AACGAGCTCATCTCGCGCGATGAAGGTCTTCACACCGACTTTGCCTGCCTTCTCTTTTCG 32322 Query 47300 CAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGT--CAGCGACATGTTTGCCGAA 47357 || | | || | ||| || | || |||||||| || | | || | |||||| Sbjct 32321 CACCTCGAGCGCCGACCA------GCAC---CCCACCGTGTCACCCAGATTATCGCCGAA 32271 Query 47358 GCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATG 47417 ||||||| || ||| || || | | || || |||||| || | || ||| Sbjct 32270 GCCGTCGAGATCGAGCAAGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCATG 32211 Query 47418 AACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTA 47477 ||||| | ||| || |||||||||| || ||||| ||||| |||| || ||| Sbjct 32210 AACGCCACCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCTC 32151 Query 47478 AAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTC 47537 | | |||| | ||| | ||||||| || ||||| |||||| | | || ||| | Sbjct 32150 GGGAACGACAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGATG 32091 Query 47538 GAGGGCAAGACCAA 47551 |||||||||||||| Sbjct 32090 GAGGGCAAGACCAA 32077 >seq6 Length=1203005 Score = 100 bits (110), Expect = 3e-16 Identities = 117/157 (75%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| || | ||| || | || | || || || ||||| || |||||||| | Sbjct 882649 CCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGGATGTTGTAATCCGAC 882708 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| ||||||| |||||||| |||||||| Sbjct 882709 AAGGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 882768 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGT 127042 ||||||||||||||| ||| || ||||| ||||| Sbjct 882769 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGT 882805 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 ||||||| |||||||| |||||||| ||||||||||||||| || || ||||| | Sbjct 883959 AGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACAT 884018 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 |||| ||||| | ||| || |||| ||| | || |||||||| || || || | Sbjct 884019 TGTCGATCGTGTCGGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 884078 Query 127101 CAAAAATCTGCATGG 127115 | || |||||||||| Sbjct 884079 CGAAGATCTGCATGG 884093 >seq8 Length=1023559 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || | || ||||| ||||| | | |||| ||| || || || || || Sbjct 348062 CGTCGACTCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAGTTGCTTCCC 348121 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| ||||||| |||||||| ||||| || ||||||||||||||| | | || ||| Sbjct 348122 TGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTCTTGACCTT 348181 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGA 127070 || | | || ||||||| |||||| |||| Sbjct 348182 GACGTCGTAGATTGTGTCCGACGACTCGACCTCGA 348216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500484980720