Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq17 100 7e-16
seq15 98.7 2e-15
seq5 98.7 2e-15
seq6 93.3 1e-13
>seq17
Length=551157
Score = 100 bits (110), Expect = 7e-16
Identities = 88/110 (80%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| |||||||| ||||||||||| |||| ||||||||| | | |||
Sbjct 51369 CGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTG 51310
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
| || || || |||||||| ||||||||||| | ||||||||||| ||
Sbjct 51309 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGG 51260
>seq15
Length=767120
Score = 98.7 bits (108), Expect = 2e-15
Identities = 113/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || ||||||||||| || | ||||||||||| | ||| | || ||
Sbjct 225794 AGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCC 225853
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| ||||| |||||||| ||||||||||| || || || || |||
Sbjct 225854 TCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 225913
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569
|| ||||| ||| ||| |||| |||||
Sbjct 225914 TGGATCTTGGCCTTGACGTTGTCGATCGTGTC 225945
>seq5
Length=1227376
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || |||||||| |||||||| || |||| |||||| || | | |||
Sbjct 829178 CGGAGACGCAGCACGAGGTGGAGCGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTA 829119
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || |||||||| || ||||||||||||||||||||||| ||| || ||
Sbjct 829118 CGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCC 829059
Query 199529 TCTCGCTCCTGAATCTT 199545
|| ||||| |||||
Sbjct 829058 TCCTTGTCCTGGATCTT 829042
>seq6
Length=1203005
Score = 93.3 bits (102), Expect = 1e-13
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474
|||| || ||||| || ||||| |||||||||| |||||| || | ||| || | |||
Sbjct 882661 CTCAAAACGAGGTGCAGGGTCGATTCCTTTTGGATGTTGTAATCCGACAAGGTGCGTCCG 882720
Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534
|| || |||||||| || |||||||| | ||||||||||| ||| || || ||
Sbjct 882721 TCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTG 882780
Query 199535 TCCTGAATCTT 199545
||||| |||||
Sbjct 882781 TCCTGGATCTT 882791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178920799438551
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |