Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq17 129 7e-25 seq5 125 8e-24 seq6 113 5e-20 seq15 109 6e-19 seq8 87.8 2e-12 >seq17 Length=551157 Score = 129 bits (142), Expect = 7e-25 Identities = 98/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| |||| |||||||||||||||||||| Sbjct 51340 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 51281 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 ||||||||||||||||||| || | || |||||||||| |||||| ||||| Sbjct 51280 GATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA 51225 >seq5 Length=1227376 Score = 125 bits (138), Expect = 8e-24 Identities = 138/181 (76%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| |||| || |||||| || ||||||||||| || || ||||| | Sbjct 829483 ACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGAATATTGTAGTCCGAAAGCGTGCGTCC 829424 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||||||||| ||||||||||||||||| | ||| | || |||||| Sbjct 829423 GTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTT 829364 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| ||||| ||| | | | |||||| ||| || || || | |||| Sbjct 829363 GTCCTGGATCTTGGCCTTGA-CGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGA 829305 Query 46557 T 46557 | Sbjct 829304 T 829304 Score = 118 bits (130), Expect = 1e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | |||||| |||| || |||||| || || || |||||| Sbjct 830659 TGCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGC 830600 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || |||||| |||| || ||||||||||||||||| ||||||||||||||||| | || Sbjct 830599 TGAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCG 830540 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | | || |||||||||| |||||| ||||| Sbjct 830539 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA 830507 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| ||| || || | || ||| || ||||| ||||| || || Sbjct 829184 CCTCCGCGGAGACGCAGCACGAGGTGGAGCGTCGACTCTTTCTGGATGTTGTAATCCGAA 829125 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || |||| ||||||||||| || ||||| || | ||||||||||||| || Sbjct 829124 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 829065 Query 46487 ACGCTCTCCTTGTCCATGATCTT 46509 | || |||||||||| |||||| Sbjct 829064 ATGCCCTCCTTGTCCTGGATCTT 829042 >seq6 Length=1203005 Score = 113 bits (124), Expect = 5e-20 Identities = 120/156 (77%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||| || || | ||||| |||| || |||||||| || ||||| Sbjct 882685 TCCTTTTGGATGTTGTAATCCGACAAGGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAG 882744 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||||||||||||||||| || | || |||||||||| |||||| ||||| ||| Sbjct 882745 ATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 882803 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 | | | ||||||| ||| || || || | ||||| Sbjct 882804 GTCAATCGTGTCGGACGACTCAACCTCGAGGGTGAT 882839 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46460 AATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGC 46519 || ||||||||||||||||||| || | || |||||||||| ||||| ||||| Sbjct 883958 AAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACA 884017 Query 46520 GTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | | ||||||| ||| || || || | |||||||| ||||| || || || || Sbjct 884018 TTGTCGATCGTGTCGGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTG 884077 Query 46580 ACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 884078 ACGAAGATCTGCAT 884091 >seq15 Length=767120 Score = 109 bits (120), Expect = 6e-19 Identities = 120/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || |||||||| |||| ||||||||||||||||| || Sbjct 225814 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 225873 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || |||||||||| |||||| ||||| ||| Sbjct 225874 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 225932 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 | | | |||||| ||| || || || | ||||| Sbjct 225933 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 225969 >seq8 Length=1023559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || | ||| ||||||||| | | ||| | || ||||| ||||| || ||||| Sbjct 348068 CTCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAGTTGCTTCCCTGCGAA 348127 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||||| ||| | || |||||||||| | |||| ||||| ||| Sbjct 348128 GATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTCTTGACCTTGA-CGT 348186 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || | ||||| ||| || || || | |||||| Sbjct 348187 CGTAGATTGTGTCCGACGACTCGACCTCGAGCGTGAT 348223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238025529560