Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq21 114 1e-20 seq5 102 8e-17 seq6 98.7 1e-15 seq17 86.0 6e-12 seq15 84.2 2e-11 >seq21 Length=276254 Score = 114 bits (126), Expect = 1e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 ||| || || ||||| || || || |||||| | | |||||| || | ||| | ||| Sbjct 32830 GATCTGGAAACCGTAGAAACAGCGGGCCTCGGCGATCTGCACCTCGGCCGAGAACCTCTC 32889 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 |||| || ||||| ||||||||||| ||||||||| ||||| || || ||| ||| Sbjct 32890 CACCAAGTTCTCGTTCACGATGCCGTCCGAGGCGGCGAAGAAGGCGAGGACATGCGAGAT 32949 Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCC 133395 ||| || ||||||||||| ||| || |||||||| | | |||||| || | |||| Sbjct 32950 GAAGTGCCGCTCGTTGTCCGTCAGTCGGTCCCAGTCCCACAGGTCCTTCGAAATGTCC 33007 >seq5 Length=1227376 Score = 102 bits (112), Expect = 8e-17 Identities = 114/151 (75%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 |||||||| | |||||| || |||||||| || |||| ||||| ||| || |||||| Sbjct 777892 CCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGAGCCGGAGAAGAAG 777951 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | |||||||||||| ||||| || || |||||||||||||| || | | | | Sbjct 777952 ATGCCCTCGACGGCGGCGAACGCGACGAGGCGCTCGCCGAAGACGGAGCGCTCGTCCGAG 778011 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTT-TTCT 133104 ||||| |||||||| |||||||| |||| Sbjct 778012 ATCCAAGTGAGCGCCCACTCGGCCTTCTTCT 778042 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 38320 TTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACG 38379 |||| | || |||| ||||| ||||| || || ||||||| ||||| ||||| | || Sbjct 829034 TTAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCG 829093 Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439 |||| || ||||| || |||| || || || || ||||||||||| || || ||| Sbjct 829094 CGGGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGA 829153 Query 38440 CGCTGCATTTGGTGCTGCGT 38459 |||| || | ||||||||| Sbjct 829154 CGCTCCACCTCGTGCTGCGT 829173 >seq6 Length=1203005 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 38280 ATCACCGTCGACGTCGAGGCCACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGA 38338 |||||| |||| || ||| | |||||| | || |||| | || | || |||| || Sbjct 882839 ATCACCCTCGAGGTTGAGTCGTCCGACACGATTGACAACG-TCAAGGCCAAGATCCAGGA 882781 Query 38339 CAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGA 38398 ||| ||||| || || ||||||| ||||| | || | |||||| || ||||| || || Sbjct 882780 CAAGGAGGGCATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA 882721 Query 38399 CGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || |||||| | || |||||||||||||||||| |||| ||||| Sbjct 882720 CGGACGCACCTTGTCGGATTACAACATCCAAAAGGAATCGACCCTGCA 882673 >seq17 Length=551157 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| ||||||| ||||| | || | ||| ||||| Sbjct 51233 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCGCCGGCAAG 51292 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| ||||| || |||||||||||||| ||||| |||| || || Sbjct 51293 CAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 51352 Query 38448 TTGGTGCTGCGT 38459 | || || ||| Sbjct 51353 CTCGTCCTCCGT 51364 >seq15 Length=767120 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 38280 ATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGA 38338 |||||| |||| |||||| | | |||| | | |||| | || | || |||| || Sbjct 225969 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 225911 Query 38339 CAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGA 38398 ||| ||||| || ||| | ||||| ||||| ||||| | || ||||| ||||| || || Sbjct 225910 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 225851 Query 38399 CGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || ||||| || ||||||||||| || ||||| |||| || || Sbjct 225850 CGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCA 225803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172468635520