Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq20 140 4e-28
seq1 87.8 2e-12
>seq20
Length=283051
Score = 140 bits (154), Expect = 4e-28
Identities = 276/404 (68%), Gaps = 11/404 (3%)
Strand=Plus/Plus
Query 11591 CGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGG 11650
||||||||||||| || ||| |||||||||| ||| || ||||| |||||| |
Sbjct 269898 CGAAACCGTCCATCTCGACGAGGAGCTGGTTGAGGGTCGACTCGCGCTCGTCGTTGCCGC 269957
Query 11651 GCATAC------CACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATA 11704
|| || | | |||| ||| ||| |||| ||||||||||| |||||||| |
Sbjct 269958 -CAAACTGTCCGCCCTTGCC--ACGAGCCTTTCCGATCGCGTCAATCTCGTCGATGAAGA 270014
Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764
||| ||||| ||| ||||| |||| || || || ||||| |||| || |
Sbjct 270015 TGATGCACGGCGCGTTCTTCTTGGCCTGGGCGAAGAGGTCTCGGACACGGCTCGCACCGA 270074
Query 11765 CACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGAC 11823
| || ||||||||||| ||||| | | | | || || || | |||||| || |
Sbjct 270075 CTCCGACGAACATCTCGACGAACTCGGAGCCGGAG-ACGGAGAGGAAGGGGACGCCGGCT 270133
Query 11824 TCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGG 11883
|| || ||| | || |||||||| ||||| || ||||| || | || | ||| | |
Sbjct 270134 TCGCCTGCGGTCGCCTTGGCGAGGAGCGTCTTGCCGGTACCGGGAGGGCCGGAGAGGATG 270193
Query 11884 GCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCC 11943
||||| ||||| ||||||||||| | |||| | || || ||||||||||| |
Sbjct 270194 GCGCCGCGGGGAATCTTGGCACCGAGGCGCTCGTAGTGTTCCGGGTTCTTGAGGAACTTG 270253
Query 11944 ACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAAC 11987
|| | |||| | ||||||||||| ||| || || ||||
Sbjct 270254 ACGAACTCCATGATCTCCTCCTTGGCCTCGTCCATTCCGGCAAC 270297
>seq1
Length=1516062
Score = 87.8 bits (96), Expect = 2e-12
Identities = 205/306 (67%), Gaps = 15/306 (5%)
Strand=Plus/Plus
Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651
||| |||||||| || ||||| |||||||||| ||||| | || | ||
Sbjct 701236 GAAGCCGTCCATCTCGGTGAGGAGCTGGTTGAGGGTCTGCTT---------GTGGAAGCT 701286
Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACA 11711
| | || ||| ||||| |||||| ||||| | ||| |||||||| |||||
Sbjct 701287 CTGGTCTTTTGGCGAGCGCTTGCCACCGACGGCGTCGAGCTCGTCGATGAAGACGATGGC 701346
Query 11712 CGGTTGGTTGGCACGTGC--CTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCT 11769
|| ||| || || | || ||| || || || ||||| ||| || |||||
Sbjct 701347 GGGAGCGTTCTTGCGGGCAGCAGT--GAAGAGCTCGCGCACACGGCGCGCGCCGACACCG 701404
Query 11770 ACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACC 11828
||| ||||||| |||| | | |||| | | || | |||||| ||| | ||| ||
Sbjct 701405 ACGTACATCTCGTCGAACTCGGACCCAGA-CGCCGAGAAGAAGGGCACACCGGCCTCGCC 701463
Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888
|||| ||| || |||||||||||||| || ||||| || | |||| || ||| ||||
Sbjct 701464 TGCGACGGCACGCGCGAGGAGAGTCTTGCCGGTACCGGGAGGGCCAGTCAGGAGGACGCC 701523
Query 11889 ACGGGG 11894
|| ||
Sbjct 701524 GCGAGG 701529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975609803400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |