Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq15 118 2e-21 seq5 113 1e-19 seq17 89.7 1e-12 >seq15 Length=767120 Score = 118 bits (130), Expect = 2e-21 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| || ||||| ||||| || | |||||| | || || ||| Sbjct 225797 ACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCG 225856 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || || ||||| || ||||| || Sbjct 225857 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 225916 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || ||||||||| || || |||||||| || || || ||||| Sbjct 225917 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 225966 >seq5 Length=1227376 Score = 113 bits (124), Expect = 1e-19 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || ||||||||||| || | ||| || | || || || ||||| Sbjct 829471 GTGCAGCGTCGACTCCTTCTGAATATTGTAGTCCGAAAGCGTGCGTCCGTCCTCAAGCTG 829412 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || ||||| || |||||||| || ||||| || || || Sbjct 829411 CTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTT 829352 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||| ||||| |||||||| || || || ||||| Sbjct 829351 GGCCTTGACGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGT 829307 Score = 107 bits (118), Expect = 4e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || ||||| || || ||| || || | ||| || || Sbjct 830639 ACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTCA 830580 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || ||||| || |||||||| || ||||| || Sbjct 830579 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGG 830520 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 || || ||||||||| || ||||||||||| Sbjct 830519 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGA 830488 Score = 104 bits (114), Expect = 5e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | || || ||| Sbjct 829166 ACGAGGTGGAGCGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCG 829107 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| ||||| ||||| || ||||| || Sbjct 829106 AGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 829047 Query 195052 ATTTT 195056 || || Sbjct 829046 ATCTT 829042 >seq17 Length=551157 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || | |||||| | || || ||| Sbjct 51357 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCG 51298 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || ||||| || || ||||| || ||||| || Sbjct 51297 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 51238 Query 195052 ATTTTTTGCTTGAC 195065 || || |||||| Sbjct 51237 ATCTTGGCCTTGAC 51224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480846592651