Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq25 152 1e-31 seq5 136 7e-27 seq21 107 4e-18 >seq25 Length=115453 Score = 152 bits (168), Expect = 1e-31 Identities = 530/817 (65%), Gaps = 24/817 (3%) Strand=Plus/Minus Query 213599 GTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTAT 213658 |||||| | ||||||||||||||| ||||| || ||||| | ||||| | | || || Sbjct 3744 GTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGAT 3685 Query 213659 CTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTA 213718 | |||||| | | ||| | ||| || | || | | ||| || Sbjct 3684 GGCGTACCAGAGCTTCTGGGCGGGAATGGTGCGCTTGGCGCGACCCTCCTT---CTCATA 3628 Query 213719 CTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGC 213778 || ||| | ||||| ||||| |||| ||| ||||| || || || || || Sbjct 3627 CTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGC 3568 Query 213779 GGGACACATGAGGCTCCAGTCCCCGTCAT-CTCTGACTCTCTGCATGAACAGGTCCGGGA 213837 || || | |||| |||||| |||| | ||| ||| | || |||||| ||||| || | Sbjct 3567 AGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTC-GACACGCTCCATGAAGAGGTCGGGAA 3509 Query 213838 CCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCA 213897 ||| || || ||||| ||| | | | ||| ||| || ||| ||||| | Sbjct 3508 TCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGA 3449 Query 213898 GATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG 213957 | || || || || |||||||| |||||||||||||| | ||||||||| || ||||||| Sbjct 3448 GGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCG 3389 Query 213958 ---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGG 214014 || | |||||||||||||| || | || ||||| | | ||| || | || Sbjct 3388 GGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGG 3329 Query 214015 GTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGT 214074 | | | ||||| || | ||||| || || || || |||||||||| || | | || Sbjct 3328 GGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGT 3269 Query 214075 TGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAG 214134 || || ||||| || ||||| ||||| ||||||||| | ||||| | | | | Sbjct 3268 TGTGGATCGAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCG 3209 Query 214135 TCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCT 214194 | || |||||| | || ||| || | | | | | |||||| |||||||| Sbjct 3208 TGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCT 3149 Query 214195 GGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAG 214254 | || | || ||| | |||||| ||||| || ||| || | | || | | Sbjct 3148 GCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCG 3089 Query 214255 AGAGGAGCCTGTAGGTCTCCAGGACTGAGGG---GATGTCGTGCTTGTGGATCTGTAGAG 214311 | | ||| |||| ||||| || | | | ||||||| ||||| || || Sbjct 3088 ACATGAGGTTGTACGTCTC---GATCGCGCGCTCAATGTCGTCGCCGTGGA--TGCCGAC 3034 Query 214312 CGC-AC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCC---CTTGAG 214366 ||| || | ||| ||||||||||| || | ||| || | ||| | | ||| Sbjct 3033 CGCGACACGCATGAGCATGTGCTGCGGTCGCTC---GGCCACCTTGCCGTCGAGGCGGAG 2977 Query 214367 CAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 |||||| || ||||| || |||||||| || |||||| Sbjct 2976 CAGGTACGACCGCTCGAGCGTCTTGAAGCCGAAGTAG 2940 >seq5 Length=1227376 Score = 136 bits (150), Expect = 7e-27 Identities = 137/176 (78%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 48178 GGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGA 48237 ||||||| ||| || ||||| | || | || ||||||||||| || | |||||| || Sbjct 777879 GGAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGA 777938 Query 48238 GCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGA--AAGAA 48295 ||| ||||||||||||||||| || || ||||||||| ||| | ||| |||| | | | Sbjct 777939 GCCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGGCGCTCGCCGAAGACGGA 777998 Query 48296 GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||| || ||| |||||||| | |||||||| || |||||||||| |||||| || Sbjct 777999 GCG--CTCGTCCGAGATCCAAGTGAGCGCCCACTCGGCCTTCTTCTGGATGCAGGG 778052 >seq21 Length=276254 Score = 107 bits (118), Expect = 4e-18 Identities = 215/314 (68%), Gaps = 15/314 (5%) Strand=Plus/Plus Query 47870 TTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGGTGTGTTATAC 47929 || ||||| ||||||| |||||| ||||||| ||| ||| ||||| | || ||| Sbjct 32077 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTAC 32136 Query 47930 ACCCGTGTCAGGCCC-ATCTGTTCCAGCAGGTGATCCGCGACGTACTCGATGTATTTTGA 47988 | | |||| ||| | | | |||| | ||||||||| |||||||||| | | Sbjct 32137 AGCT-TGTCGTTCCCGAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGTCG 32195 Query 47989 CATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTT 48048 |||||||||| ||||||||| || | | |||||||| || | || || || || | Sbjct 32196 CATGAGGGTGGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCTTG 32255 Query 48049 CTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGTTTGTT--G 48106 ||| |||| |||||||| | | |||||| | || ||| || || || | | Sbjct 32256 CTCGATCTCGACGGCTTCGGCGATAATCTGGGTGACACGG-----TGGGGTGCTGGTCGG 32310 Query 48107 CGC---AGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGG 48163 ||| |||||| | | |||| | |||||||||||| |||| | ||||| || || Sbjct 32311 CGCTCGAGGTGC---GAAAAGAGAAGGCAGGCAAAGTCGGTGTGAAGACCTTCATCGCGC 32367 Query 48164 CTGATGAGCACGTT 48177 ||||||| |||| Sbjct 32368 GAGATGAGCTCGTT 32381 Score = 96.9 bits (106), Expect = 6e-15 Identities = 122/164 (74%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 ||| ||||| | |||| || ||||||||||| || | ||||| ||||| |||||||| Sbjct 32452 ACCGGGCATCAAGCCCCGCTTCTTGAGCCAGAAGATCGAGGCGAACGAGCCGGAGAAGAA 32511 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCG-AAAGA-AGCGTTCTTGTCT 48307 ||||||||| || || ||||| ||| || || |||| ||||| ||| ||| Sbjct 32512 GATGCCCTCGACAGCGGCGAAAGCGACCAG--TCGTTCCGCAAAGACGGCGCCAGGGTCC 32569 Query 48308 GAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 |||||||| ||||||||| || |||||||| |||||| || Sbjct 32570 GAGATCCATCGAAGCGCCCACTCGGCCTTCTTGGCGATGCAGGG 32613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532182859520