Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq11 264 1e-65
seq6 159 5e-34
seq15 150 2e-31
seq5 149 8e-31
seq20 104 3e-17
>seq11
Length=913747
Score = 264 bits (292), Expect = 1e-65
Identities = 871/1343 (65%), Gaps = 21/1343 (2%)
Strand=Plus/Minus
Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538
|| ||||||||||| ||||| || || || ||||||||| | || | ||||| |
Sbjct 726014 ACCGTCTTTGACGCCAAGCGCCTCATCGGACGCAAGTTTGCCGACGCCGAGGTCCAGTCC 725955
Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTC--CCGGTGTGGCTGATAAGCCTATGATTA 195596
|| || ||| ||||| | | | ||| | || | || ||| ||||| || ||
Sbjct 725954 GACATGAAGCACTGGCCGT-TCAAGGTCATCGACAAGTCGGGC----AAGCCCATCATCT 725900
Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656
|| || | | || ||| |||| | || | ||||| || || ||||| |||||
Sbjct 725899 CGGTCGAGTACAAGGGCGAGCAGAAGGAGTTCACGCCCGAGGAGATCTCGTCGATGGTCC 725840
Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716
| | |||||||||||||| || || | | | | || || || | || || |
Sbjct 725839 TCCTCAAGATGAAGGAGACGGCCGAGGCCTACCTCGGCGGCACCGTCGCCAACGCCGTCG 725780
Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT- 195775
| || || || || ||||||| || || || || ||||| || |||||||| | |||
Sbjct 725779 TCACCGTCCCCGCCTACTTCAACGACTCGCAGCGCCAGGCCACCAAGGACGC--CGGCTT 725722
Query 195776 -ATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834
|| |||| || ||| || | || ||||| || || || || || || || || ||
Sbjct 725721 GATCTCGGGCCTCAACGTCCTCCGCATCATCAACGAGCCCACCGCCGCCGCCATCGCGTA 725662
Query 195835 TGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894
|| || |||||||| || | || || || || | ||||| || | || || ||
Sbjct 725661 CGGCCTCGACAAGAAGTCCGAGGGCGAGAAGAACGTCCTCATCTTCGACTTGGGAGGCGG 725602
Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954
||||| || ||||| || |||| || || | || || ||||| || ||||| || ||
Sbjct 725601 CACGTTCGACGTCTCGCTCCTCACGATCGAGGAGGGCATCTTCGAGGTCAAGGCCACCGC 725542
Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTG 196013
|| || || || || || || || || || || || || || || |||||| |
Sbjct 725541 CGGCGACACCCACCTCGGCGGCGAGGACTTTGACAACCGCCTCGTCAACCACTTTGTC-G 725483
Query 196014 ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTC-TGGAAATCCTAGGGCTCTTCGTCGG 196072
|||||| || ||||| ||||| || | || | ||| || | || || || ||
Sbjct 725482 CCGAGTTCAAGCGCAAGAACAAGAAGGACCTCTCGTCGAACGCC-CGCGCCCTCCGCCGC 725424
Query 196073 CTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTT 196132
|| | || || || || || ||||| || || ||||| || | || || || | | |
Sbjct 725423 CTCCGCACCGCCTGCGAGCGCGCCAAGCGCACCCTCTCGTCGGCCGCCCAGACCACGATC 725364
Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192
||||| || ||| | || || || || |||||||| || | || ||||| || || ||
Sbjct 725363 GAGATCGACTCGCTCTTCGAGGGCATCGACTTCTACACCTCGATCACCCGCGCCCGCTTC 725304
Query 196193 GAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252
|| ||| | | || | || | | ||||| || || || | || || ||
Sbjct 725303 GAGGAGCTCTGCCAGGACCTCTTCCGCTCGACCATGGAGCCCGTCGAGAAGGTCCTCCGC 725244
Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312
||| | ||||| || ||| ||| | || |||||||| || || || || ||||||
Sbjct 725243 GACTCGAAGATTGACAAGCAGTCGGTCCACGAGATTGTCCTCGTCGGCGGCTCGACCCGT 725184
Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372
|| ||| | || || | | || ||||||| || || ||||| ||
Sbjct 725183 ATCCCGCGTGTCCAGAAGCTCGTCTCCGACTTCTTCGGCGGCAAGGAGCCCAACAAGTCG 725124
Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432
||||||||||| || || || || || || || ||||| |||||||| || ||| | ||
Sbjct 725123 ATCAACCCGGACGAGGCCGTCGCGTACGGCGCCGCCGTCCAGGCTGCCATCCTCACCGG- 725065
Query 196433 GTTGACA---ATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTG 196489
|||| | || ||| || || || || || || || || || | ||
Sbjct 725064 --CGACACGTCCGAGAAGACCCAGGACCTCCTCCTCCTCGACGTCGCCCCTCTCTCGACC 725007
Query 196490 GGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCG 196549
||| | || || || || ||||| ||||| || | || | ||||| || | |||
Sbjct 725006 GGTATCGAGACCGCCGGCGGTGTCATGACCAAGCTCATCCCGCGCAACACGACCGTCCCG 724947
Query 196550 ACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAA 196609
|| |||||| | |||| || || || |||| || || || || || || ||
Sbjct 724946 ACCAAGAAGTCGGAGATCTTCTCGACCTACGCCGACAACCAGCCGGGCGTCTTGATCCAG 724887
Query 196610 GTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTG 196669
|| || ||||| || ||| |||| | ||||| ||| | || || || | || || |
Sbjct 724886 GTCTACGAAGGGGAGCGCGCCCGCACCAAGGACAACAACCTCCTCGGCAAGTTTGAGCTC 724827
Query 196670 ACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGAC 196729
|||| || || | || ||| | || || || ||||| | || |||||| || |||
Sbjct 724826 TCGGGCATCCCCCCCGCGCCCCGCGGCGTCCCCCAGATCGAGGTCACCTTCGACATCGAC 724767
Query 196730 GCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATT 196789
|| || || || || |||||| | ||| ||||||| | | ||||| || | |||||
Sbjct 724766 GCCAACGGCATCCTCAACGTCTCGGCTTCGGACAAGACCACCGGCAAGTCGAACAAGATC 724707
Query 196790 GTGATTACCAATGACAAGGGGCG 196812
|| ||||| ||||||| |||
Sbjct 724706 ACCATCACCAACGACAAGGTGCG 724684
>seq6
Length=1203005
Score = 159 bits (176), Expect = 5e-34
Identities = 150/191 (79%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957
||||||||||||||||||||||| ||||| || || ||| |||| |||||||| || ||
Sbjct 882839 ATCACCCTCGAGGTTGAGTCGTCCGACACGATTGACAACGTCAAGGCCAAGATCCAGGAC 882780
Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017
||||| ||||| || ||||| ||||| || | || || || || || |||||||| ||
Sbjct 882779 AAGGAGGGCATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGAC 882720
Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGG 172077
||||| ||| | | ||||||||| | |||||||| || || || ||||| ||| | |||
Sbjct 882719 GGACGCACCTTGTCGGATTACAACATCCAAAAGGAATCGACCCTGCACCTCGTTTTGAGG 882660
Query 172078 CTTCGGGGTGG 172088
| || |||||
Sbjct 882659 TTGCGCGGTGG 882649
Score = 127 bits (140), Expect = 3e-24
Identities = 103/125 (82%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || ||||| || || || || |||||||||||||||||||||||
Sbjct 884091 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCC 884032
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || |||| ||||||||||| || ||||| ||||| || ||||| |||
Sbjct 884031 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 883972
Query 171982 CAACG 171986
|| ||
Sbjct 883971 CAGCG 883967
>seq15
Length=767120
Score = 150 bits (166), Expect = 2e-31
Identities = 139/176 (79%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957
|||||||||||||| |||||||| ||||| ||||| ||| |||| |||||||| || ||
Sbjct 225969 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGAC 225910
Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017
||||| ||||| || || || ||||| || || || ||||| || || ||||| || ||
Sbjct 225909 AAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGAC 225850
Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073
|| || || || |||| |||||| |||| |||||||| || || ||||| || ||
Sbjct 225849 GGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCACCTCGTCCT 225794
>seq5
Length=1227376
Score = 149 bits (164), Expect = 8e-31
Identities = 148/192 (77%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957
|||||||||||||| |||||||| ||||| || || ||| |||| |||||||| || ||
Sbjct 829304 ATCACCCTCGAGGTCGAGTCGTCGGACACGATTGACAACGTCAAGGCCAAGATCCAGGAC 829363
Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017
||||| |||||||| || || ||||| || | || || || || || |||||||| ||
Sbjct 829364 AAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGAC 829423
Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGG 172077
||||| || || | || ||||| |||| |||||||| || || ||| | || || |
Sbjct 829424 GGACGCACGCTTTCGGACTACAATATTCAGAAGGAGTCGACGCTGCACTTGGTGCTTCGT 829483
Query 172078 CTTCGGGGTGGT 172089
||||| ||||||
Sbjct 829484 CTTCGCGGTGGT 829495
>seq20
Length=283051
Score = 104 bits (114), Expect = 3e-17
Identities = 271/403 (67%), Gaps = 13/403 (3%)
Strand=Plus/Minus
Query 198459 GTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAAAAC 198518
|||| || || ||| || ||||| ||| || |||| | || | || || || |||
Sbjct 270297 GTTGCCGGAATGGACGAGGCCAAGGAGGAGATCATGGAGTTCGTCAAGTTCCTCAAGAAC 270238
Query 198519 CCCGAAAAGTACTATGGAAGTGGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCC 198578
|| ||| | ||| | | |||||| || || || || || | ||| |||| |
Sbjct 270237 CCGGAACACTACGAGCGCCTCGGTGCCAAGATTCCCCGCGGCGCCATCCTCTCCGGCCCT 270178
Query 198579 CCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTT 198638
|| ||||| || || || || || || || | ||| || ||| | | ||||||||
Sbjct 270177 CCCGGTACCGGCAAGACGCTCCTCGCCAAGGCGACCGCAGGCGAAGCCGGCGTCCCCTTC 270118
Query 198639 CT-TCAGTGCTCCG-CGGCGAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCG 198696
|| || || ||||| | |||||| | ||||||||||||| || || ||||| | || |
Sbjct 270117 CTCTCCGT-CTCCGGCTCCGAGTT-CGTCGAGATGTTCGTCGGAGTCGGTGCGAGCCGTG 270060
Query 198697 TCCGGGAACTCTTTGAGCAAGCACGTGAA-AATCAACCATGTATCATCTTCATTGATGAG 198755
|||| || ||||| | || || | ||| || || || ||||||||||| || |||
Sbjct 270059 TCCGAGACCTCTTCGCCCAGGC-CAAGAAGAACGCGCCGTGCATCATCTTCATCGACGAG 270001
Query 198756 ATTGACGCTGTTGGTAAGAAGCGTGGTGGAACTAC-TACACCT----GGTAATGATGAGC 198810
|||||||| | || ||| |||| | || | ||| | || || || ||||
Sbjct 270000 ATTGACGCGATCGGAAAGGCTCGTG--GCAAGGGCGGACAGTTTGGCGGCAACGACGAGC 269943
Query 198811 GTGAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTT 198853
| ||| ||| | |||||||| ||| |||||||| |||||
Sbjct 269942 GCGAGTCGACCCTCAACCAGCTCCTCGTCGAGATGGACGGTTT 269900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657861964166160
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