Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq11 264 1e-65 seq6 159 5e-34 seq15 150 2e-31 seq5 149 8e-31 seq20 104 3e-17 >seq11 Length=913747 Score = 264 bits (292), Expect = 1e-65 Identities = 871/1343 (65%), Gaps = 21/1343 (2%) Strand=Plus/Minus Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||||||| ||||| || || || ||||||||| | || | ||||| | Sbjct 726014 ACCGTCTTTGACGCCAAGCGCCTCATCGGACGCAAGTTTGCCGACGCCGAGGTCCAGTCC 725955 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTC--CCGGTGTGGCTGATAAGCCTATGATTA 195596 || || ||| ||||| | | | ||| | || | || ||| ||||| || || Sbjct 725954 GACATGAAGCACTGGCCGT-TCAAGGTCATCGACAAGTCGGGC----AAGCCCATCATCT 725900 Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 || || | | || ||| |||| | || | ||||| || || ||||| ||||| Sbjct 725899 CGGTCGAGTACAAGGGCGAGCAGAAGGAGTTCACGCCCGAGGAGATCTCGTCGATGGTCC 725840 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | | |||||||||||||| || || | | | | || || || | || || | Sbjct 725839 TCCTCAAGATGAAGGAGACGGCCGAGGCCTACCTCGGCGGCACCGTCGCCAACGCCGTCG 725780 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT- 195775 | || || || || ||||||| || || || || ||||| || |||||||| | ||| Sbjct 725779 TCACCGTCCCCGCCTACTTCAACGACTCGCAGCGCCAGGCCACCAAGGACGC--CGGCTT 725722 Query 195776 -ATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834 || |||| || ||| || | || ||||| || || || || || || || || || Sbjct 725721 GATCTCGGGCCTCAACGTCCTCCGCATCATCAACGAGCCCACCGCCGCCGCCATCGCGTA 725662 Query 195835 TGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894 || || |||||||| || | || || || || | ||||| || | || || || Sbjct 725661 CGGCCTCGACAAGAAGTCCGAGGGCGAGAAGAACGTCCTCATCTTCGACTTGGGAGGCGG 725602 Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954 ||||| || ||||| || |||| || || | || || ||||| || ||||| || || Sbjct 725601 CACGTTCGACGTCTCGCTCCTCACGATCGAGGAGGGCATCTTCGAGGTCAAGGCCACCGC 725542 Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTG 196013 || || || || || || || || || || || || || || || |||||| | Sbjct 725541 CGGCGACACCCACCTCGGCGGCGAGGACTTTGACAACCGCCTCGTCAACCACTTTGTC-G 725483 Query 196014 ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTC-TGGAAATCCTAGGGCTCTTCGTCGG 196072 |||||| || ||||| ||||| || | || | ||| || | || || || || Sbjct 725482 CCGAGTTCAAGCGCAAGAACAAGAAGGACCTCTCGTCGAACGCC-CGCGCCCTCCGCCGC 725424 Query 196073 CTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTT 196132 || | || || || || || ||||| || || ||||| || | || || || | | | Sbjct 725423 CTCCGCACCGCCTGCGAGCGCGCCAAGCGCACCCTCTCGTCGGCCGCCCAGACCACGATC 725364 Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192 ||||| || ||| | || || || || |||||||| || | || ||||| || || || Sbjct 725363 GAGATCGACTCGCTCTTCGAGGGCATCGACTTCTACACCTCGATCACCCGCGCCCGCTTC 725304 Query 196193 GAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252 || ||| | | || | || | | ||||| || || || | || || || Sbjct 725303 GAGGAGCTCTGCCAGGACCTCTTCCGCTCGACCATGGAGCCCGTCGAGAAGGTCCTCCGC 725244 Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 ||| | ||||| || ||| ||| | || |||||||| || || || || |||||| Sbjct 725243 GACTCGAAGATTGACAAGCAGTCGGTCCACGAGATTGTCCTCGTCGGCGGCTCGACCCGT 725184 Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372 || ||| | || || | | || ||||||| || || ||||| || Sbjct 725183 ATCCCGCGTGTCCAGAAGCTCGTCTCCGACTTCTTCGGCGGCAAGGAGCCCAACAAGTCG 725124 Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 ||||||||||| || || || || || || || ||||| |||||||| || ||| | || Sbjct 725123 ATCAACCCGGACGAGGCCGTCGCGTACGGCGCCGCCGTCCAGGCTGCCATCCTCACCGG- 725065 Query 196433 GTTGACA---ATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTG 196489 |||| | || ||| || || || || || || || || || | || Sbjct 725064 --CGACACGTCCGAGAAGACCCAGGACCTCCTCCTCCTCGACGTCGCCCCTCTCTCGACC 725007 Query 196490 GGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCG 196549 ||| | || || || || ||||| ||||| || | || | ||||| || | ||| Sbjct 725006 GGTATCGAGACCGCCGGCGGTGTCATGACCAAGCTCATCCCGCGCAACACGACCGTCCCG 724947 Query 196550 ACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAA 196609 || |||||| | |||| || || || |||| || || || || || || || Sbjct 724946 ACCAAGAAGTCGGAGATCTTCTCGACCTACGCCGACAACCAGCCGGGCGTCTTGATCCAG 724887 Query 196610 GTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTG 196669 || || ||||| || ||| |||| | ||||| ||| | || || || | || || | Sbjct 724886 GTCTACGAAGGGGAGCGCGCCCGCACCAAGGACAACAACCTCCTCGGCAAGTTTGAGCTC 724827 Query 196670 ACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGAC 196729 |||| || || | || ||| | || || || ||||| | || |||||| || ||| Sbjct 724826 TCGGGCATCCCCCCCGCGCCCCGCGGCGTCCCCCAGATCGAGGTCACCTTCGACATCGAC 724767 Query 196730 GCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATT 196789 || || || || || |||||| | ||| ||||||| | | ||||| || | ||||| Sbjct 724766 GCCAACGGCATCCTCAACGTCTCGGCTTCGGACAAGACCACCGGCAAGTCGAACAAGATC 724707 Query 196790 GTGATTACCAATGACAAGGGGCG 196812 || ||||| ||||||| ||| Sbjct 724706 ACCATCACCAACGACAAGGTGCG 724684 >seq6 Length=1203005 Score = 159 bits (176), Expect = 5e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 ||||||||||||||||||||||| ||||| || || ||| |||| |||||||| || || Sbjct 882839 ATCACCCTCGAGGTTGAGTCGTCCGACACGATTGACAACGTCAAGGCCAAGATCCAGGAC 882780 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| ||||| || ||||| ||||| || | || || || || || |||||||| || Sbjct 882779 AAGGAGGGCATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGAC 882720 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGG 172077 ||||| ||| | | ||||||||| | |||||||| || || || ||||| ||| | ||| Sbjct 882719 GGACGCACCTTGTCGGATTACAACATCCAAAAGGAATCGACCCTGCACCTCGTTTTGAGG 882660 Query 172078 CTTCGGGGTGG 172088 | || ||||| Sbjct 882659 TTGCGCGGTGG 882649 Score = 127 bits (140), Expect = 3e-24 Identities = 103/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || ||||||||||||||||||||||| Sbjct 884091 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCC 884032 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||||||| || ||||| ||||| || ||||| ||| Sbjct 884031 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 883972 Query 171982 CAACG 171986 || || Sbjct 883971 CAGCG 883967 >seq15 Length=767120 Score = 150 bits (166), Expect = 2e-31 Identities = 139/176 (79%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 |||||||||||||| |||||||| ||||| ||||| ||| |||| |||||||| || || Sbjct 225969 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGAC 225910 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| ||||| || || || ||||| || || || ||||| || || ||||| || || Sbjct 225909 AAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGAC 225850 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || || || || |||| |||||| |||| |||||||| || || ||||| || || Sbjct 225849 GGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCACCTCGTCCT 225794 >seq5 Length=1227376 Score = 149 bits (164), Expect = 8e-31 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 |||||||||||||| |||||||| ||||| || || ||| |||| |||||||| || || Sbjct 829304 ATCACCCTCGAGGTCGAGTCGTCGGACACGATTGACAACGTCAAGGCCAAGATCCAGGAC 829363 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| |||||||| || || ||||| || | || || || || || |||||||| || Sbjct 829364 AAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGAC 829423 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGG 172077 ||||| || || | || ||||| |||| |||||||| || || ||| | || || | Sbjct 829424 GGACGCACGCTTTCGGACTACAATATTCAGAAGGAGTCGACGCTGCACTTGGTGCTTCGT 829483 Query 172078 CTTCGGGGTGGT 172089 ||||| |||||| Sbjct 829484 CTTCGCGGTGGT 829495 >seq20 Length=283051 Score = 104 bits (114), Expect = 3e-17 Identities = 271/403 (67%), Gaps = 13/403 (3%) Strand=Plus/Minus Query 198459 GTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAAAAC 198518 |||| || || ||| || ||||| ||| || |||| | || | || || || ||| Sbjct 270297 GTTGCCGGAATGGACGAGGCCAAGGAGGAGATCATGGAGTTCGTCAAGTTCCTCAAGAAC 270238 Query 198519 CCCGAAAAGTACTATGGAAGTGGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCC 198578 || ||| | ||| | | |||||| || || || || || | ||| |||| | Sbjct 270237 CCGGAACACTACGAGCGCCTCGGTGCCAAGATTCCCCGCGGCGCCATCCTCTCCGGCCCT 270178 Query 198579 CCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTT 198638 || ||||| || || || || || || || | ||| || ||| | | |||||||| Sbjct 270177 CCCGGTACCGGCAAGACGCTCCTCGCCAAGGCGACCGCAGGCGAAGCCGGCGTCCCCTTC 270118 Query 198639 CT-TCAGTGCTCCG-CGGCGAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCG 198696 || || || ||||| | |||||| | ||||||||||||| || || ||||| | || | Sbjct 270117 CTCTCCGT-CTCCGGCTCCGAGTT-CGTCGAGATGTTCGTCGGAGTCGGTGCGAGCCGTG 270060 Query 198697 TCCGGGAACTCTTTGAGCAAGCACGTGAA-AATCAACCATGTATCATCTTCATTGATGAG 198755 |||| || ||||| | || || | ||| || || || ||||||||||| || ||| Sbjct 270059 TCCGAGACCTCTTCGCCCAGGC-CAAGAAGAACGCGCCGTGCATCATCTTCATCGACGAG 270001 Query 198756 ATTGACGCTGTTGGTAAGAAGCGTGGTGGAACTAC-TACACCT----GGTAATGATGAGC 198810 |||||||| | || ||| |||| | || | ||| | || || || |||| Sbjct 270000 ATTGACGCGATCGGAAAGGCTCGTG--GCAAGGGCGGACAGTTTGGCGGCAACGACGAGC 269943 Query 198811 GTGAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTT 198853 | ||| ||| | |||||||| ||| |||||||| ||||| Sbjct 269942 GCGAGTCGACCCTCAACCAGCTCCTCGTCGAGATGGACGGTTT 269900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861964166160