Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq6 114 1e-20 seq5 86.0 6e-12 >seq6 Length=1203005 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 24740 ATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGAC 24799 || || ||||| || || | ||||||| | || | || || |||||||| ||| Sbjct 882839 ATCACCCTCGAGGTTGAGTCGTCCGACACGATTGACAACGTCAAGGCCAAGATCCAGGAC 882780 Query 24800 AAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || || || |||||||| || || || |||||||| || ||||| ||||| ||||| Sbjct 882779 AAGGAGGGCATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGAC 882720 Query 24860 TCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 | | | |||| ||||| ||||| |||||||||||||| || ||| | || ||| | Sbjct 882719 GGACGCACCTTGTCGGATTACAACATCCAAAAGGAATCGACCCTGCACCTCGTTTTGAGG 882660 Query 24920 TTGCGCGGAGG 24930 |||||||| || Sbjct 882659 TTGCGCGGTGG 882649 >seq5 Length=1227376 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/147 (74%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || || || || || || || || || |||||||| ||||| || Sbjct 830515 AAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAG 830574 Query 24848 CAGCTGGAGGATTCGAGAAACATG-TCAG--ATTATAACATTCAAAAGGAATCGACACTA 24904 ||||| ||||| | | || | |||| | ||||||||||| ||||| ||||| || Sbjct 830575 CAGCTTGAGGACGGGCG---CACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTG 830631 Query 24905 CACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| ||||| | || | ||||| ||| Sbjct 830632 CACCTGGTGCTTCGTCTCCGCGGTGGC 830658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897301942840