Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq25 255 6e-63 seq5 113 4e-20 seq6 107 2e-18 seq15 96.9 3e-15 seq17 87.8 2e-12 >seq25 Length=115453 Score = 255 bits (282), Expect = 6e-63 Identities = 524/764 (69%), Gaps = 19/764 (2%) Strand=Plus/Minus Query 148932 CTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACT 148991 |||||| ||||||||||| |||||| | || ||| || || ||||| | || | Sbjct 3746 CTGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGG 3687 Query 148992 ATGAACCGATGCAGGTC--CTGCGCGCGCACT-TGCTGCTCGTAGCGACCCTCCTGCTCG 149048 ||| || ||| | ||| ||| | | ||| ||| | ||||||||||| ||| Sbjct 3686 ATGG--CGTACCAGAGCTTCTGGGCGGGAATGGTGC-GCTTGGCGCGACCCTCCTTCTCA 3630 Query 149049 TATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTG 149108 || ||||| || |||| | ||||||||| |||| ||| ||||| || | Sbjct 3629 TACTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCG 3570 Query 149109 TGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGC 149168 ||||| | ||| | ||| |||||| | | || |||| ||| || || ||||| Sbjct 3569 GCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGA 3510 Query 149169 ACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGC 149228 | |||||| || | | | ||||||||| | || || ||| ||| ||| Sbjct 3509 ATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGG 3450 Query 149229 AGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCC 149288 |||| ||| | ||| ||||| |||||||||||||| | ||| | |||| ||||||| Sbjct 3449 AGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCC 3390 Query 149289 TTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATA 149345 ||||||| |||||||||||||||| |||| | ||||||| |||| || | ||| Sbjct 3389 GGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATG 3330 Query 149346 GGTTCAATGCCACTGGCAGT-GCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGC 149402 || ||||| | | ||| |||||| || | ||| ||| |||| ||| || Sbjct 3329 GGGATGATGCCGTTCG-AGTAGCCGTTCGTGCCGGCGATGTACGA--GCCGGTCGCGCGG 3273 Query 149403 ACTTTGTGCACGTTGACGCCGATGCCGCCG-CCGTACTTTGAGATGGCCGCGCA-GTCGC 149460 | ||||| | || |||||||||||| |||| ||| |||||| |||||| ||| Sbjct 3272 ATGTTGTGGATCGAGAGACCGATGCCGCCGGCCGT-CTTGGAGATGAGCGCGCACGTCTT 3214 Query 149461 CGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGC 149520 |||||| ||||||||||||||| |||| |||||| || | || |||||||| Sbjct 3213 -GAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACG 3155 Query 149521 ACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATT 149580 | | ||||| |||||||||| ||| | || || |||||| ||||| || Sbjct 3154 AGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACC 3095 Query 149581 TCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTA 149640 || ||| | | ||||| ||||| | |||| || ||||| ||||| |||||||| | Sbjct 3094 GCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGA 3035 Query 149641 TGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTG 149684 ||||| ||||| ||||| |||||||||||||| ||||| ||| Sbjct 3034 CCGCGACACGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTG 2991 Score = 152 bits (168), Expect = 5e-32 Identities = 367/551 (67%), Gaps = 12/551 (2%) Strand=Plus/Minus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 || || || |||||||||||||||||||| ||| | ||| ||||| ||||| |||| Sbjct 4885 GTACGGAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGAC 4826 Query 148011 GACATGAGCGTGTAC----GTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTC 148066 | ||||| || | ||||| || | | || | |||||| |||||| Sbjct 4825 G---TGAGC-TGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTC 4770 Query 148067 AATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGC 148126 |||||||| || ||||| |||| | || |||| ||| | |||||||| | Sbjct 4769 GATGAACGCTCCGCGGTCGGCGGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCACAC 4710 Query 148127 CGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCG 148186 ||||||||| | ||||||| | ||| || || ||| || | ||| | ||||||| Sbjct 4709 CGTCTTGTAGATGCGCTTGAGCTCATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTT 4650 Query 148187 GTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATC 148246 |||||| | ||| || ||| |||| | | ||| | | |||| ||||| Sbjct 4649 GTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCG 4590 Query 148247 GATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTT 148306 || || | | || || ||||| |||||||||||||| || || || || | ||| Sbjct 4589 GAGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTT 4530 Query 148307 GCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGG 148366 | ||| |||| || |||| ||||||| ||| | ||||| |||| || || || Sbjct 4529 GGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTAGTCGACGCGGTCGG 4470 Query 148367 CAT--GTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGA 148424 ||| || ||| | ||||||||||| | ||| | | || || ||||| Sbjct 4469 CATCGGTGCGCAGACG--AGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAAC 4412 Query 148425 GCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCG 148484 | ||||||||||| || || ||| || |||||||||| ||||||||| | | |||| Sbjct 4411 TCGGCCCAGTCCCACAGGTCCGTCGGCGTGACGTTCCACAGGTCGTACTGTAAGAGGCCG 4352 Query 148485 CGGCTAGCGGG 148495 |||| ||||| Sbjct 4351 TGGCTCGCGGG 4341 >seq5 Length=1227376 Score = 113 bits (124), Expect = 4e-20 Identities = 95/115 (83%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||||||||| || |||||||| | | | | |||| ||||||||||||||| | Sbjct 829154 GTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTCC 829097 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||||| | ||||| ||||||||||||||||||||||| |||||||| |||||| Sbjct 829096 CCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 829042 Score = 96.9 bits (106), Expect = 3e-15 Identities = 215/315 (68%), Gaps = 17/315 (5%) Strand=Plus/Plus Query 120382 TTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGT--TGCTCGCGTTAA 120439 || || |||||||||||||| || ||| |||||| |||||||||| | || | | || Sbjct 777476 TTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTCTCCTTGTGGTAG 777535 Query 120440 AGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACAAACTCAATGTACTCGC 120499 | | ||| | ||| | | | |||| |||||| || || ||||| ||||||| || Sbjct 777536 ATCTTCTCG--TTGCCGAGCGCGATAAGCAATCGGTCTGCCACGAACTCGATGTACTGGC 777593 Query 120500 ACATG-GACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGCCGACGTGAAAAACTCC 120558 ||||| || || ||||||||| | | | || || | |||| |||| |||||| Sbjct 777594 ACATGAGATCGC-TGTTCATGCCGATGAGCTTGACGGGGAGCGCCTCGGTGAGGAACTCC 777652 Query 120559 TTCTCAATGTCCACCGCCTCCTTGAACATG---GCGAGCATAGTGTGG-CCGGGCATCTT 120614 | ||| || || |||||||| || ||| ||| | | | || |||| Sbjct 777653 TGCTCGATCTCGACCGCCTCGCGGATGATGCGCTCGACCGTTTCGGGGTGAGGGC----G 777708 Query 120615 GTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCG 120674 | | |||| | ||| | || ||||| || ||||| ||||| || ||||||||||| Sbjct 777709 GCGCTCGAGGTGCG---AGAAGAGGAGGCAGGCGAAGTCGGTGTGGAGACCCTCGTCGCG 777765 Query 120675 CGATATCAGCTCGTT 120689 ||| || |||||||| Sbjct 777766 CGAGATGAGCTCGTT 777780 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| |||||||| || | |||| |||||| ||||||||||| Sbjct 829464 GTCGACTCCTTCTGAATATTGTAGTCCGAAAGCGTGCGTCCGTCCTCAAGCTGCTTGCCG 829405 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | ||||||||||| || || ||||| |||||||| |||||| |||| Sbjct 829404 GCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 829345 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 | | |||| |||||| | | ||| || |||| ||||| Sbjct 829344 ACGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGA 829305 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || || || |||| | |||| | |||||| ||||||||||| Sbjct 830627 GTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTCAAGCTGCTTGCCG 830568 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | ||||||||||| || || ||||| |||||||| |||||| |||| Sbjct 830567 GCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 830508 Query 133584 A 133584 | Sbjct 830507 A 830507 >seq6 Length=1203005 Score = 107 bits (118), Expect = 2e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 ||||||||||||||||||||||| |||||||| ||||| ||||| | || | | Sbjct 883967 CGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATC 884026 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 ||||||| | ||| || |||| ||||| ||| |||||||| || || || ||||| ||| Sbjct 884027 GTGTCGGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATC 884086 Query 133656 TGCATGG 133662 ||||||| Sbjct 884087 TGCATGG 884093 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| || || || || || |||||||| || ||| |||||| |||||||| || Sbjct 882678 GGTCGATTCCTTTTGGATGTTGTAATCCGACAAGGTGCGTCCGTCCTCAAGCTGCTTCCC 882737 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 |||| | || | ||||||||||||||||||||||| |||||||| |||||| ||| Sbjct 882738 CGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 882797 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || | |||| |||||||| | ||| || |||| ||||| Sbjct 882798 GACGTTGTCAATCGTGTCGGACGACTCAACCTCGAGGGTGA 882838 >seq15 Length=767120 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||||||||||||||| Sbjct 225808 GGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 225867 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 225868 GGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 225927 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || | || | |||||| | | ||| || |||| ||||| Sbjct 225928 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGA 225968 >seq17 Length=551157 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||||||||||||||| Sbjct 51346 GGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 51287 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 51286 GGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 51227 Query 133583 GAGCTG 133588 || ||| Sbjct 51226 GACCTG 51221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420479733720