Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq25 255 6e-63
seq5 113 4e-20
seq6 107 2e-18
seq15 96.9 3e-15
seq17 87.8 2e-12
>seq25
Length=115453
Score = 255 bits (282), Expect = 6e-63
Identities = 524/764 (69%), Gaps = 19/764 (2%)
Strand=Plus/Minus
Query 148932 CTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACT 148991
|||||| ||||||||||| |||||| | || ||| || || ||||| | || |
Sbjct 3746 CTGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGG 3687
Query 148992 ATGAACCGATGCAGGTC--CTGCGCGCGCACT-TGCTGCTCGTAGCGACCCTCCTGCTCG 149048
||| || ||| | ||| ||| | | ||| ||| | ||||||||||| |||
Sbjct 3686 ATGG--CGTACCAGAGCTTCTGGGCGGGAATGGTGC-GCTTGGCGCGACCCTCCTTCTCA 3630
Query 149049 TATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTG 149108
|| ||||| || |||| | ||||||||| |||| ||| ||||| || |
Sbjct 3629 TACTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCG 3570
Query 149109 TGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGC 149168
||||| | ||| | ||| |||||| | | || |||| ||| || || |||||
Sbjct 3569 GCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGA 3510
Query 149169 ACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGC 149228
| |||||| || | | | ||||||||| | || || ||| ||| |||
Sbjct 3509 ATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGG 3450
Query 149229 AGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCC 149288
|||| ||| | ||| ||||| |||||||||||||| | ||| | |||| |||||||
Sbjct 3449 AGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCC 3390
Query 149289 TTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATA 149345
||||||| |||||||||||||||| |||| | ||||||| |||| || | |||
Sbjct 3389 GGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATG 3330
Query 149346 GGTTCAATGCCACTGGCAGT-GCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGC 149402
|| ||||| | | ||| |||||| || | ||| ||| |||| ||| ||
Sbjct 3329 GGGATGATGCCGTTCG-AGTAGCCGTTCGTGCCGGCGATGTACGA--GCCGGTCGCGCGG 3273
Query 149403 ACTTTGTGCACGTTGACGCCGATGCCGCCG-CCGTACTTTGAGATGGCCGCGCA-GTCGC 149460
| ||||| | || |||||||||||| |||| ||| |||||| |||||| |||
Sbjct 3272 ATGTTGTGGATCGAGAGACCGATGCCGCCGGCCGT-CTTGGAGATGAGCGCGCACGTCTT 3214
Query 149461 CGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGC 149520
|||||| ||||||||||||||| |||| |||||| || | || ||||||||
Sbjct 3213 -GAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACG 3155
Query 149521 ACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATT 149580
| | ||||| |||||||||| ||| | || || |||||| ||||| ||
Sbjct 3154 AGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACC 3095
Query 149581 TCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTA 149640
|| ||| | | ||||| ||||| | |||| || ||||| ||||| |||||||| |
Sbjct 3094 GCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGA 3035
Query 149641 TGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTG 149684
||||| ||||| ||||| |||||||||||||| ||||| |||
Sbjct 3034 CCGCGACACGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTG 2991
Score = 152 bits (168), Expect = 5e-32
Identities = 367/551 (67%), Gaps = 12/551 (2%)
Strand=Plus/Minus
Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010
|| || || |||||||||||||||||||| ||| | ||| ||||| ||||| ||||
Sbjct 4885 GTACGGAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGAC 4826
Query 148011 GACATGAGCGTGTAC----GTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTC 148066
| ||||| || | ||||| || | | || | |||||| ||||||
Sbjct 4825 G---TGAGC-TGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTC 4770
Query 148067 AATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGC 148126
|||||||| || ||||| |||| | || |||| ||| | |||||||| |
Sbjct 4769 GATGAACGCTCCGCGGTCGGCGGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCACAC 4710
Query 148127 CGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCG 148186
||||||||| | ||||||| | ||| || || ||| || | ||| | |||||||
Sbjct 4709 CGTCTTGTAGATGCGCTTGAGCTCATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTT 4650
Query 148187 GTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATC 148246
|||||| | ||| || ||| |||| | | ||| | | |||| |||||
Sbjct 4649 GTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCG 4590
Query 148247 GATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTT 148306
|| || | | || || ||||| |||||||||||||| || || || || | |||
Sbjct 4589 GAGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTT 4530
Query 148307 GCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGG 148366
| ||| |||| || |||| ||||||| ||| | ||||| |||| || || ||
Sbjct 4529 GGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTAGTCGACGCGGTCGG 4470
Query 148367 CAT--GTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGA 148424
||| || ||| | ||||||||||| | ||| | | || || |||||
Sbjct 4469 CATCGGTGCGCAGACG--AGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAAC 4412
Query 148425 GCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCG 148484
| ||||||||||| || || ||| || |||||||||| ||||||||| | | ||||
Sbjct 4411 TCGGCCCAGTCCCACAGGTCCGTCGGCGTGACGTTCCACAGGTCGTACTGTAAGAGGCCG 4352
Query 148485 CGGCTAGCGGG 148495
|||| |||||
Sbjct 4351 TGGCTCGCGGG 4341
>seq5
Length=1227376
Score = 113 bits (124), Expect = 4e-20
Identities = 95/115 (83%), Gaps = 4/115 (3%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521
|| ||||||||||| || |||||||| | | | | |||| ||||||||||||||| |
Sbjct 829154 GTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTCC 829097
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
||||| | ||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 829096 CCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 829042
Score = 96.9 bits (106), Expect = 3e-15
Identities = 215/315 (68%), Gaps = 17/315 (5%)
Strand=Plus/Plus
Query 120382 TTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGT--TGCTCGCGTTAA 120439
|| || |||||||||||||| || ||| |||||| |||||||||| | || | | ||
Sbjct 777476 TTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTCTCCTTGTGGTAG 777535
Query 120440 AGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACAAACTCAATGTACTCGC 120499
| | ||| | ||| | | | |||| |||||| || || ||||| ||||||| ||
Sbjct 777536 ATCTTCTCG--TTGCCGAGCGCGATAAGCAATCGGTCTGCCACGAACTCGATGTACTGGC 777593
Query 120500 ACATG-GACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGCCGACGTGAAAAACTCC 120558
||||| || || ||||||||| | | | || || | |||| |||| ||||||
Sbjct 777594 ACATGAGATCGC-TGTTCATGCCGATGAGCTTGACGGGGAGCGCCTCGGTGAGGAACTCC 777652
Query 120559 TTCTCAATGTCCACCGCCTCCTTGAACATG---GCGAGCATAGTGTGG-CCGGGCATCTT 120614
| ||| || || |||||||| || ||| ||| | | | || ||||
Sbjct 777653 TGCTCGATCTCGACCGCCTCGCGGATGATGCGCTCGACCGTTTCGGGGTGAGGGC----G 777708
Query 120615 GTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCG 120674
| | |||| | ||| | || ||||| || ||||| ||||| || |||||||||||
Sbjct 777709 GCGCTCGAGGTGCG---AGAAGAGGAGGCAGGCGAAGTCGGTGTGGAGACCCTCGTCGCG 777765
Query 120675 CGATATCAGCTCGTT 120689
||| || ||||||||
Sbjct 777766 CGAGATGAGCTCGTT 777780
Score = 95.1 bits (104), Expect = 1e-14
Identities = 117/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||| ||||| |||||||| || | |||| |||||| |||||||||||
Sbjct 829464 GTCGACTCCTTCTGAATATTGTAGTCCGAAAGCGTGCGTCCGTCCTCAAGCTGCTTGCCG 829405
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || | ||||||||||| || || ||||| |||||||| |||||| ||||
Sbjct 829404 GCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 829345
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
| | |||| |||||| | | ||| || |||| |||||
Sbjct 829344 ACGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGA 829305
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||| ||||| || || || |||| | |||| | |||||| |||||||||||
Sbjct 830627 GTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTCAAGCTGCTTGCCG 830568
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || | ||||||||||| || || ||||| |||||||| |||||| ||||
Sbjct 830567 GCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 830508
Query 133584 A 133584
|
Sbjct 830507 A 830507
>seq6
Length=1203005
Score = 107 bits (118), Expect = 2e-18
Identities = 100/127 (79%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595
||||||||||||||||||||||| |||||||| ||||| ||||| | || | |
Sbjct 883967 CGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATC 884026
Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655
||||||| | ||| || |||| ||||| ||| |||||||| || || || ||||| |||
Sbjct 884027 GTGTCGGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATC 884086
Query 133656 TGCATGG 133662
|||||||
Sbjct 884087 TGCATGG 884093
Score = 105 bits (116), Expect = 6e-18
Identities = 120/161 (75%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| || || || || || |||||||| || ||| |||||| |||||||| ||
Sbjct 882678 GGTCGATTCCTTTTGGATGTTGTAATCCGACAAGGTGCGTCCGTCCTCAAGCTGCTTCCC 882737
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|||| | || | ||||||||||||||||||||||| |||||||| |||||| |||
Sbjct 882738 CGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 882797
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
|| | |||| |||||||| | ||| || |||| |||||
Sbjct 882798 GACGTTGTCAATCGTGTCGGACGACTCAACCTCGAGGGTGA 882838
>seq15
Length=767120
Score = 96.9 bits (106), Expect = 3e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||| ||||| || ||||| || | ||| ||||||||||||||||||
Sbjct 225808 GGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 225867
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | ||||| ||||||||||| || |||||||| |||||||| |||||| |||
Sbjct 225868 GGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 225927
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
|| | || | |||||| | | ||| || |||| |||||
Sbjct 225928 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGA 225968
>seq17
Length=551157
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||| ||||| || ||||| || | ||| ||||||||||||||||||
Sbjct 51346 GGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 51287
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || | |||||||||||||| |||||||| |||||||| |||||| |||
Sbjct 51286 GGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 51227
Query 133583 GAGCTG 133588
|| |||
Sbjct 51226 GACCTG 51221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483420479733720
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