Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq6 127 2e-24
seq5 95.1 1e-14
seq15 84.2 2e-11
>seq6
Length=1203005
Score = 127 bits (140), Expect = 2e-24
Identities = 148/197 (75%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565
||| ||||| || |||||||| || | || | || |||||||| |||||||||||
Sbjct 882645 ATTCCCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGGATGTTGTAATC 882704
Query 35566 GGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA 35625
| |||||| || |||| || |||||||| ||||| || ||||| ||||||||||| |
Sbjct 882705 CGACAAGGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGG 882764
Query 35626 AGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATT 35684
||| | || |||||||||| |||||| ||| | |||| | | ||||||| ||| |
Sbjct 882765 AGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATCGTGTCGGACGACT 882823
Query 35685 CCACCTCCACCGTGATC 35701
| ||||| | ||||||
Sbjct 882824 CAACCTCGAGGGTGATC 882840
>seq5
Length=1227376
Score = 95.1 bits (104), Expect = 1e-14
Identities = 128/176 (73%), Gaps = 2/176 (1%)
Strand=Plus/Minus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
|||||| || | ||| |||||| ||||| ||||| || | | || || |||| ||
Sbjct 829477 CACCAAGTGCAGCGTCGACTCCTTCTGAATATTGTAGTCCGAAAGCGTGCGTCCGTCCTC 829418
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
|||||||| || || || ||||| ||||||||||| | |||| || ||||||||||
Sbjct 829417 AAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTG 829358
Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701
|||||| ||| | |||| | | |||||| ||| || ||||| | ||||||
Sbjct 829357 GATCTTGGCCTTGA-CGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGATC 829303
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
||||| || | ||| |||||| |||||||| || ||| | || ||| |||| ||
Sbjct 830640 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTC 830581
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
|||||||| || || || ||||| ||||||||||| | |||| || ||||||||||
Sbjct 830580 AAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTG 830521
Query 35647 GATCTT 35652
||||||
Sbjct 830520 GATCTT 830515
>seq15
Length=767120
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/158 (73%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| ||||||||||| || | | || || |||| || |||||||| || |||||
Sbjct 225814 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 225873
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||| | || | || |||||||||| |||||| ||| | ||
Sbjct 225874 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 225932
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701
|| | | |||||| ||| || ||||| | ||||||
Sbjct 225933 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 225970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793301349240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |