Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq6 111 2e-19 seq8 105 7e-18 seq15 100 3e-16 seq17 91.5 1e-13 >seq6 Length=1203005 Score = 111 bits (122), Expect = 2e-19 Identities = 133/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 134501 CAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTGAGAGT 134559 ||| |||||||| || || ||||||||||| |||||||| | || ||| |||| | || Sbjct 882663 CAAAACGAGGTGCAGGGTCGATTCCTTTTGGATGTTGTAATCCGACAA-GGTGCGTCCGT 882721 Query 134560 CGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTT 134619 | || ||||| || || || || ||||| |||||||| ||||| || ||||| || || | Sbjct 882722 CCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGT 882781 Query 134620 CTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 | || || || ||||| ||| | ||||||||||| || || ||||| || || Sbjct 882782 CCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGACGACTCAACCTCGAGGGTGAT 882839 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 134580 AAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACC 134639 || ||||| |||||||| ||||| || ||||| || || || ||||| || ||||| Sbjct 883958 AAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACA 884017 Query 134640 GCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTA 134699 ||| | ||||||||||| || || ||||| || ||||| || ||||| | || || Sbjct 884018 TTGTCGATCGTGTCGGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTG 884077 Query 134700 ACGAAAATTTGCAT 134713 ||||| || ||||| Sbjct 884078 ACGAAGATCTGCAT 884091 >seq8 Length=1023559 Score = 105 bits (116), Expect = 7e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 134507 GAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAG 134566 |||||| ||||| || || || | |||||||||||||| || | | || || ||||| Sbjct 348053 GAGGTGGAGCGTCGACTCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAG 348112 Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 || || ||||| || ||||| |||||||| |||||||| ||||| || || || || | Sbjct 348113 TTGCTTCCCTGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGT 348172 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || ||||| ||| | |||||| ||||| || || ||||| || || Sbjct 348173 CTTGACCTTGACGTCGTAGATTGTGTCCGACGACTCGACCTCGAGCGTGAT 348223 >seq15 Length=767120 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| |||||||||||||| || ||| | ||| ||| Sbjct 225797 ACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCG 225856 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| || | |||||||| || || || ||||| || || || || Sbjct 225857 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 225916 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || || ||||| ||| | ||||| ||||| || || ||||| || || Sbjct 225917 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 225969 >seq17 Length=551157 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| || ||||||||||| || ||| | ||| ||| Sbjct 51357 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCG 51298 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || ||||| |||||||| ||||| || ||||| || || || || Sbjct 51297 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 51238 Query 134625 ATTTT 134629 || || Sbjct 51237 ATCTT 51233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398065173560