Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq25 176 6e-39
seq16 87.8 2e-12
>seq25
Length=115453
Score = 176 bits (194), Expect = 6e-39
Identities = 489/739 (66%), Gaps = 17/739 (2%)
Strand=Plus/Minus
Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889
|| |||||||| |||||| | || | |||||||| |||| || ||| || || | |
Sbjct 3737 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTAC 3678
Query 118890 CAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948
|||| | || | || || | ||| ||||| || ||||| | ||| ||||| | |
Sbjct 3677 CAGAGCTTCTGG-GCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAA 3619
Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008
|| | | ||||| || || | |||| ||| || ||||||| | ||||||||
Sbjct 3618 CAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGCAGAA 3559
Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068
||| | ||| | || || ||| || |||| |||||||||||| || |||||||| ||
Sbjct 3558 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGC 3499
Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128
|||| | || || ||| | || || | || || || || | || | ||
Sbjct 3498 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 3439
Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA-- 119186
|| | ||| || ||||||||||| || ||||| | |||| | ||| ||
Sbjct 3438 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 3379
Query 119187 -CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACC 119245
|| |||||| || || | ||| ||| ||| | || || ||||| || ||||| ||
Sbjct 3378 GCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 3319
Query 119246 ATCGGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCGTGGATG 119303
| || | ||| || || || ||| |||||| | | || | || | ||||||
Sbjct 3318 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGG--TCGCGCGGATGTTGTGGATC 3261
Query 119304 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 119363
| ||| || || || ||| ||| ||||| |||||||| | |||| || |||||
Sbjct 3260 GAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 3201
Query 119364 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG 119423
|| || ||||||||||| |||| | | || ||||||||| ||| | || ||
Sbjct 3200 ATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGC 3141
Query 119424 GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTT 119482
|| || || ||||||||||| || || | ||||| | || |||| | |||||
Sbjct 3140 GGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGT-AAAGTACCGCTCCGACATGAG 3082
Query 119483 GTCGTAGGTCTCCAAGACGGCGGG---AATGTCTTCCCCGTGAATACCGATCGAGACCCG 119539
|| ||| ||||| || ||| | |||||| || ||||| || |||| || ||| ||
Sbjct 3081 GTTGTACGTCTC---GATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACG 3025
Query 119540 CATAAACATGTATTGGGGT 119558
||| | ||||| || |||
Sbjct 3024 CATGAGCATGTGCTGCGGT 3006
>seq16
Length=742613
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 12072 GGGAACCTCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGG 12131
|| |||||| ||||| || | ||||||||||| || ||||| || || | |||||||
Sbjct 591524 GGCAACCTCGACGCCAAGCGCGACTGGGGACACGCTCGCGACTACGTCGAGGGCATGTGG 591465
Query 12132 CTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 12191
| | | || || || || || | || || | |||| ||||||| || ||||| ||| ||
Sbjct 591464 CGCATGCTCCAGCAGGACCAGCCCGATGACTTTGTCCTCGCGACTGGCGAGACCCACCCC 591405
Query 12192 GTCAGGGAGTTCGTTGAG 12209
||| | ||||| || |||
Sbjct 591404 GTCCGCGAGTTTGTCGAG 591387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618434790286680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |