Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq25 138 1e-27
seq8 109 6e-19
>seq25
Length=115453
Score = 138 bits (152), Expect = 1e-27
Identities = 482/741 (65%), Gaps = 21/741 (3%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| ||||||| || || |||| || || || || |||||||| |
Sbjct 3007 CCGCAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAGCGCGCG 3066
Query 104282 TTGGAGACATACGACAAGATGTCCCAA-GGTATGTTCATTCACGCAACACCAACCCTCTT 104340
| ||||| ||| || ||||| | |||| || | ||||| | || || |||||
Sbjct 3067 ATCGAGACGTACAACCTCATGTCGGAGCGGTACTTT-ACGCACGCCTCGCCGACGCTCTT 3125
Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400
||| || || || || || || | || |||||||| || | | ||||| ||
Sbjct 3126 CAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGA 3185
Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460
||| ||| | || ||||| | || || | | ||| |||| ||||| ||| ||| ||
Sbjct 3186 CTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCCGG 3245
Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 104518
|| || || | ||||| | | | || | |||||| ||| || ||
Sbjct 3246 CGGCATCGGTCTCTCGATCCACAACATCCGCGCGACCGG--CTCGTACATCGCCGGCACG 3303
Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578
|| || | || | || || || || ||||| ||||| | ||| ||| ||||||||
Sbjct 3304 AACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGCTAC 3363
Query 104579 GTAAATCAAGCTGGGCGTCGAAA-------GGGATCTATCGCAGTCTATCTTGAGCCATG 104631
|| | || ||||| | | | ||| | |||| |||| || ||||| ||
Sbjct 3364 GTCGACCA----GGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTG 3419
Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691
|||||| || ||| | |||||||| || | || ||||| || | ||||||| ||
Sbjct 3420 GCACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCG 3479
Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751
||||| | |||| || ||||||||||| || ||||||||| || | || ||| |
Sbjct 3480 CGCGCGCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCA 3539
Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811
|| ||| | ||| | ||||| || || | | ||||||| || ||| ||| | | ||
Sbjct 3540 GAACGGCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGG 3599
Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCG-ACGG 104870
|| ||||| | | || | | ||||| ||| | || ||||| || | ||| ||
Sbjct 3600 CGACGAGTTCAAGGAGCTGTTCGAGAAGTATGAGAAGGAGGGTCGCGCCA-AGCGCACCA 3658
Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929
| || || | || | | ||| | || || ||| || | || |||||| || | ||
Sbjct 3659 TTCCCGC-CCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCC 3717
Query 104930 TACATGCTTTACAAAGACGCC 104950
| |||||| ||||| ||||||
Sbjct 3718 TTCATGCTCTACAAGGACGCC 3738
>seq8
Length=1023559
Score = 109 bits (120), Expect = 6e-19
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 169348 CTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGAC 169407
||| || || || |||||||||||||||| || ||||| ||||||| |||||||| |||
Sbjct 35202 CTTTCCGCGGAGCGGGAAGACACCGTAGTTGTCGCGACCGACGACGGCGAGACCCGAGAC 35143
Query 169408 TGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTT 169455
||||| | ||| |||||||| |||||||| | ||||||||| || ||
Sbjct 35142 GGCGAGCGCCTTGGCCGAGTCTCCCTCGGTCAGGATGAGCGTGCACTT 35095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260413589720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |