Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq25 444 6e-120 >seq25 Length=115453 Score = 444 bits (492), Expect = 6e-120 Identities = 540/733 (74%), Gaps = 2/733 (0%) Strand=Plus/Minus Query 79170 GGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTC 79229 ||||||||||||| |||| | || | || ||||| ||||| || ||| | | ||| Sbjct 3738 GGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTA 3679 Query 79230 CCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTA 79289 ||||| | | |||| | | |||| ||||||| | ||| || | | Sbjct 3678 CCAGAGCTTCTGGGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAA 3619 Query 79290 CAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACAT 79349 || ||| ||||| | || || ||||| ||| | ||||| || |||| ||||| | Sbjct 3618 CAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGCAGAA 3559 Query 79350 CAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGC 79409 ||| ||||||| ||| || ||| || ||||||||||||||| || ||||| ||||| Sbjct 3558 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGC 3499 Query 79410 CGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAA 79469 ||| | |||||| || | |||||| | ||| |||||| || || ||||| || Sbjct 3498 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 3439 Query 79470 GTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCC 79529 || | ||||||||||||||||||||| || ||||||||||||| ||| ||||||| Sbjct 3438 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 3379 Query 79530 GCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCC 79589 ||||||||||| |||||| || || ||||||||| | || ||||||||||| | |||||| Sbjct 3378 GCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 3319 Query 79590 GTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTG 79649 || | | ||||||||| ||| ||| | ||| |||| || ||||| | | | | Sbjct 3318 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTT-GTGGATCG 3260 Query 79650 -GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708 || |||||||| |||| | |||||||||| |||||||| ||||||||| ||||||| Sbjct 3259 AGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGA 3200 Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768 ||||||||||||||||||||||||| | ||| |||||||| ||| | ||| |||| Sbjct 3199 TGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCG 3140 Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGAT 79828 ||| |||||||||||||| ||||||| |||||||| ||| || | ||| || | Sbjct 3139 GCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGT 3080 Query 79829 CGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 ||||||||| | ||||| | ||||||||||||||||||||||||||| ||||||| Sbjct 3079 TGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACGCATGA 3020 Query 79889 AGAGGTACTGGGG 79901 | || ||| || Sbjct 3019 GCATGTGCTGCGG 3007 Score = 387 bits (428), Expect = 2e-102 Identities = 533/740 (72%), Gaps = 4/740 (1%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||||| ||||||||||||||||| ||||||||| | ||| | Sbjct 3007 CCGCAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAGCGCGCG 3066 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 |||||| ||| |||| ||| || || ||| |||||||| ||||||| || ||| Sbjct 3067 ATCGAGACGTACAACCTCATGTCGGAGCGGTACTTTACGCACGCCTCGCCGACGCTCTTC 3126 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 |||||||| ||| |||||||| | ||| || ||||| || | |||||||| ||| Sbjct 3127 AACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGAC 3186 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 || |||||||||||||| ||||||||| |||||||| |||||||||| | |||| Sbjct 3187 TCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCCGGC 3246 Query 19343 GGTATCGGGATC-CACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAA 19401 || ||||| || | | | | || ||||| ||| || | ||| || ||||| Sbjct 3247 GGCATCGGTCTCTCGATCCAC-AACATCCGCGCGACCGGCTCGTACATCGCCGGCACGAA 3305 Query 19402 CGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACG 19460 ||| || ||| ||| ||| |||| ||||||||||| | ||||||||| || | |||| Sbjct 3306 CGGC-TACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGCTACG 3364 Query 19461 TCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACG 19520 || ||||||| ||| ||| ||| |||| |||||||||||||||||||||| ||||||| Sbjct 3365 TCGACCAGGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACG 3424 Query 19521 CGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC 19580 | ||| || | || |||||||| || ||| |||||| || | |||||| | ||| | Sbjct 3425 CCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCGC 3484 Query 19581 GCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACG 19640 ||||| | ||| ||| | |||||||| ||||| ||||||||| || ||| || ||| Sbjct 3485 GCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAGAACG 3544 Query 19641 AAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGG 19700 || |||| ||| | ||||| ||| || ||||| | ||| ||||||||||| | Sbjct 3545 GCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGGCGACG 3604 Query 19701 CGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGG 19760 |||||| ||| ||| | || || | |||| || |||| | | | Sbjct 3605 AGTTCAAGGAGCTGTTCGAGAAGTATGAGAAGGAGGGTCGCGCCAAGCGCACCATTCCCG 3664 Query 19761 CCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGT 19820 ||| | | ||||| || | ||||| | |||||||||||| |||| || | |||| Sbjct 3665 CCCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCATGC 3724 Query 19821 GCTACAAGGACGCCGCGAAC 19840 ||||||||||||||| ||| Sbjct 3725 TCTACAAGGACGCCGCCAAC 3744 Score = 221 bits (244), Expect = 1e-52 Identities = 566/857 (66%), Gaps = 56/857 (7%) Strand=Plus/Minus Query 78183 GGCGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTG 78242 |||||| || || | |||||||||||||||||||||||||||||||| ||||| | ||| Sbjct 4892 GGCGCGGGTACGGAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTG 4833 Query 78243 CATACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTG 78302 ||| || |||| |||| |||| | | | || |||||||||||| ||||| Sbjct 4832 CATCGACGTGAGCTGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTG 4773 Query 78303 GTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362 ||||||| |||| ||||||||||| | | ||||||||| ||| |||| |||||||| Sbjct 4772 GTCGATGAACGCTCCGCGGTCGGCGGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCA 4713 Query 78363 GATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTACGCTCCCACC 78422 | ||| ||| ||| ||| ||||| || |||| | | | | | || || Sbjct 4712 CACCGTCTTGTAGATGCGCTTGAGCTCATCAGGGATACCGGGGACGTTCTGGATCGAGCC 4653 Query 78423 G--GCTCGC-ACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATC 78479 | | ||| | || ||||| || |||||| | | | || || Sbjct 4652 GTTGTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTC 4593 Query 78480 CCGGACCAGGTGCC---GGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTA 78536 ||| ||| ||| |||| | | |||||||||||| ||| ||||| ||| Sbjct 4592 GCGG---AGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACACGGCGGGTGTA 4536 Query 78537 GATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGC 78596 |||||||| ||||||||||||||| ||||||||| || | ||||||| ||||| || Sbjct 4535 GATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTAGTCGACGC 4476 Query 78597 GGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTT 78656 ||||||||| |||||| | || || || || | || ||| | |||| |||| Sbjct 4475 GGTCGGCATCGGTGCGCAGACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTT 4416 Query 78657 ----TAGGCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGAT 78710 | |||| |||||| | || ||| || || ||||| ||| || | || Sbjct 4415 CAACTCGGCCCAGTCCCACAGGTCCGTCGGCGTGACGTTCCACAGGTCGTACTGTAAGAG 4356 Query 78711 ACCCTCGGACGCCGGCGA---------CCCCTTGAACGTCTCGTAAGATCCCTCCTC--- 78758 || | | ||| ||||| | ||||| ||| | ||| | || ||| Sbjct 4355 GCCGTGGCTCGCGGGCGAGCCGCCGTTCTCCTTGTACGACGGGTACCAGCCGGGCTCGCC 4296 Query 78759 ---CTTGGCGA----GT--TCGC---------------ATGACTCGAGCAGGGCCGCGTG 78794 | ||||| || |||| | ||||||| | || ||||| Sbjct 4295 AGGGTGGGCGATCGCGTAGTCGCGCGCCATGTCGCACGACGACTCGATC---GCGGCGTG 4239 Query 78795 GTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAG 78854 ||| | | ||||||||| |||||| | |||||||| || | |||||||| || Sbjct 4238 GTAGATCGTCTCGAAGATCTGGACGTTGAGGTGGCGCGCCTCGGGCGAGTCGAACGGCAG 4179 Query 78855 GCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCG 78914 || ||| ||||||| | ||||| |||||||| || |||||| ||||||| |||||||| Sbjct 4178 GCGGAGGGCCATGAAGGCGTCGGCGAGGCCCTGCACACCGATACCGATCGGGCGGTGGCG 4119 Query 78915 CATGTTGCT-CTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCA 78973 | |||||| | || |||| ||| | ||||| |||| ||||||| |||||||| Sbjct 4118 GAAGTTGCTGCGCTC-GGCCTCCTTGACGGGGTAGTAGTTGACGTCGATGATGCGGTTCA 4060 Query 78974 GGTTACGCGTGACGACC 78990 |||| |||||||||| Sbjct 4059 GGTTGTACGTGACGACC 4043 Score = 215 bits (238), Expect = 6e-51 Identities = 621/947 (66%), Gaps = 64/947 (7%) Strand=Plus/Plus Query 19928 GCCGTGTGTAATCTGGCGTCCCTGTGC-CTGCCGACTTTCGTCAAGGCCTCCTCCTTCGA 19986 ||||| || || || ||||| | ||| || ||| | ||| ||||| | | | ||| Sbjct 3957 GCCGTCTGCAACCTCGCGTCGAT-TGCGCTCCCGTCGTTCATCAAGAACGGCGAGTACGA 4015 Query 19987 CTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGA 20046 ||| || || |||| || | |||||||||| || ||||| ||| ||||||| Sbjct 4016 CTTCAAGAAGCTGCACGACGTCGTCAAGGTCGTCACGTACAACCTGAACCGCATCATCGA 4075 Query 20047 TCGGAACTTTTACCCGACCGAGGCGGC---GCGCAAGTCGAATATGCGCCACCGGCCGAT 20103 |||| ||||| | ||| ||| ||||| || | |||||||| ||||| Sbjct 4076 CGTCAACTACTACCCCGTCAAGGAGGCCGAGCGCAGC---AACTTCCGCCACCGCCCGAT 4132 Query 20104 CGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGA 20163 || ||||| || |||||||| ||||||| |||||| ||| |||| | |||||| Sbjct 4133 CGGTATCGGTGTGCAGGGCCTCGCCGACGCCTTCATGGCCCTCCGCCTGCCGTTCGACTC 4192 Query 20164 TCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCT 20223 ||| |||||||| | |||||| ||||||||| | | |||||||| || || Sbjct 4193 GCCCGAGGCGCGCCACCTCAACGTCCAGATCTTCGAGACGATCTACCACGCCGCGATCGA 4252 Query 20224 GGAATCGTGCGA--------------AC----TCGCCAAA------GAGGACGGCCCGTA 20259 | |||||||| || ||||| | ||| |||| ||| Sbjct 4253 GTCGTCGTGCGACATGGCGCGCGACTACGCGATCGCCCACCCTGGCGAGCCCGGCTGGTA 4312 Query 20260 CGAGACGTTCAAGGGG---------TCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACAT 20310 | | ||| ||||| | ||||||||| | | || || | ||| ||| | Sbjct 4313 CCCGTCGTACAAGGAGAACGGCGGCTCGCCCGCGAGCCACGGCCTCTTACAGTACGACCT 4372 Query 20311 GTGGGGCGTCACTGAGAATGAGTTTTGGAGC---GCCC---TCAAGGTTGAGATCAAGAC 20364 |||| |||||| || || | ||| | ||| | |||| |||| | Sbjct 4373 GTGGAACGTCACGCCGACGGACCTGTGGGACTGGGCCGAGTTGAAGGAGAAGATTGCGCA 4432 Query 20365 CCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGAT 20424 ||||| | ||||||||| | || ||| || ||||||||||| ||||| |||||| Sbjct 4433 GCACGGCATCCGCAACTCGCTCGTCTGCGCACCGATGCCGACCGCGTCGACTAGCCAGAT 4492 Query 20425 CATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACT 20484 | | || ||||||||| ||||||||||||||| ||||||||||| || ||| || Sbjct 4493 CCTCGGCTTCAACGAGGCGTTCGAGCCGTACACGTCCAACATCTACACCCGCCGTGTCCT 4552 Query 20485 GGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGG----TCCGCGACTTGCAGAAGATCG 20540 ||||| |||||| || ||| ||| | ||||| |||||||| | | || Sbjct 4553 CGCCGGCGAGTTC--CA-GGTCGTCAACC-CCTGGCTCCTCCGCGACCTCGTCGACCGCG 4608 Query 20541 ATATGTGGTCGCCCAAAATTAAGAATGAAATTGTC-CGAGC--CGGCGGGAGCGTCCAGG 20597 ||||| | || ||||| || || || | |||| || ||||| Sbjct 4609 GCCTGTGGAACGACGCGATGAAGAACACGATCATCGCGCACAACGGCTCGA---TCCAGA 4665 Query 20598 CATTG---GATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCAC 20654 | | |||||| | | |||||| ||| |||| ||| || ||||| ||| | | Sbjct 4666 ACGTCCCCGGTATCCCTGATGAGCTCAAGCGCATCTACAAGACGGTGTGGGAGATCTCGC 4725 Query 20655 AGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGC 20714 ||||| | |||||||| | | ||||| ||||| || | |||||||||||| ||||||| Sbjct 4726 AGAAGGTCGTCATCGACCTCTCCGCCGACCGCGGAGCGTTCATCGACCAGTCGCAGTCGC 4785 Query 20715 TCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCT 20774 |||| ||| | | | |||| | ||||| |||| | || ||||| | ||||||| Sbjct 4786 TCAACGTCCACCTCTCGTCGCCGACCATGGCGCAGCTCACGTCGATGCACTTCTACGGCT 4845 Query 20775 GGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACCCGAGCC 20821 || | ||||| |||||||||||||||||||| || || ||||| ||| Sbjct 4846 GGAAGAAGGGTCTCAAGACGGGCATGTACTACCTCCGTACCCGCGCC 4892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524436602320