Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq25 358 7e-94
seq8 132 5e-26
seq16 122 1e-22
seq7 107 2e-18
>seq25
Length=115453
Score = 358 bits (396), Expect = 7e-94
Identities = 515/719 (72%), Gaps = 8/719 (1%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC--TACACGCGTGTCCGTGAGACGTA 53250
||||||| ||||| | || |||||||| |||||| | |||| | || |||||||
Sbjct 3020 TCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAGCGCGCGATCG--AGACGTA 3077
Query 53251 CGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310
| || | ||| | |||||||||||||||| |||| || || |||||||| || ||
Sbjct 3078 CAACCTCATGTCGGAGCGGTACTTTACGCACGCCTCGCCGACGCTCTTCAACGCCGGCAC 3137
Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370
| ||||| ||| | ||| |||||||| || |||||||||| ||||||||||| ||
Sbjct 3138 GCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTCGATCGAGGG 3197
Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430
||||||||| ||||||||| ||| || | |||||||||| | | || || |||||| |
Sbjct 3198 CATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCCGGCGGCATCGGTCT 3257
Query 53431 C-CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489
| | | | | ||| |||| |||| |||| | ||| || ||||||||| | |
Sbjct 3258 CTCGATCCAC-AACATCCGCGCGACCGGCTCGTACATCGCCGGCACGAACGGCTACTCGA 3316
Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549
| || ||| | || ||||||||||| | ||||||||| || || |||||| ||||||| |
Sbjct 3317 ACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGCTACGTCGACCAGGGCG 3376
Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609
| |||||| ||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 3377 GCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATCTTCG 3436
Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTA 53669
|||| ||||| || || ||| || || | || ||| | ||| || ||| ||||
Sbjct 3437 AGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCGCGCGACTTGTTCT 3496
Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729
|| || |||||||| |||||||||||| | || ||| || ||| || ||| ||
Sbjct 3497 TTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAGAACGGCGACTGGCCCC 3556
Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789
| | ||||| |||| ||||||||||| | |||||||| || ||||| || |||
Sbjct 3557 TCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGGCGACGAGTTCAAGGAGC 3616
Query 53790 TGTATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTA 53848
||| ||| || ||| | |||| ||| |||| | | || | || |
Sbjct 3617 TGT-TCGAGAAGTATGAGAAGGAGGGTCGCGCCAAGCGCACCATTCCCGCCCAGAAGCTC 3675
Query 53849 TGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGA 53907
||| | || |||||| || |||||| |||||||| | || | |||| |||||||||
Sbjct 3676 TGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCATGCTCTACAAGGA 3734
Score = 159 bits (176), Expect = 4e-34
Identities = 323/465 (69%), Gaps = 21/465 (5%)
Strand=Plus/Plus
Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537
||| | |||||||| || || || || ||||| ||||||||||| |||||| |
Sbjct 4437 GGCATCCGCAACTCGCTCGTCTGCGCACCGATGCCGACCGCGTCGACTAGCCAGATCCTC 4496
Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597
||| ||||||||||||||||||||||||| ||||||||||| ||||| ||| ||
Sbjct 4497 GGCTTCAACGAGGCGTTCGAGCCGTACACGTCCAACATCTACACCCGCCGTGTCCTCGCC 4556
Query 55598 GGTGAGTTTGTCATGATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAG 55654
|| ||||| || | || ||| | | ||| || ||||| | | | |
Sbjct 4557 GGCGAGTTC--CAGG-TCGTCAACCCCTGGCTCCTCCGCGACCTCGTCGACCGCGGCCTG 4613
Query 55655 TGGAACC-CGCAGATCAAGACG--GAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCT 55710
|||||| ||| ||| |||| ||| || | || ||||| || ||||||| |
Sbjct 4614 TGGAACGACGC-GATGAAGAACACGATCATCGCGCACAACGGC---TCGATCCAGAACGT 4669
Query 55711 G---GAGATTCCTC-TGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA 55766
| || ||| || | |||||| || ||| ||||||||||||||| | ||||
Sbjct 4670 CCCCGGTATCCCTGATGAG-CTCAAGCGCATCTACAAGACGGTGTGGGAGATCTCGCAGA 4728
Query 55767 AGAGTC-TGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTG 55825
|| ||| | || ||| | || || || || |||| |||||||||||| ||||| ||
Sbjct 4729 AG-GTCGTCATCGACCTCTCCGCCGACCGCGGAGCGTTCATCGACCAGTCGCAGTCGCTC 4787
Query 55826 AACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGG 55885
||| || | | | || | |||| || | | ||||||||||| ||||| |||
Sbjct 4788 AACGTCCACCTCTCGTCGCCGACCATGGCGCAGCTCACGTCGATGCACTTCTACGGCTGG 4847
Query 55886 AAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCC 55930
|||||||| ||||||||||| |||||||| || || |||||||||
Sbjct 4848 AAGAAGGGTCTCAAGACGGGCATGTACTACCTCCGTACCCGCGCC 4892
Score = 84.2 bits (92), Expect = 2e-11
Identities = 104/141 (74%), Gaps = 6/141 (4%)
Strand=Plus/Plus
Query 55139 AACCTGAACCGGGTCATCGACAAGAATTACTACCC---GACTGAAGCGGCGCGCAAGTCC 55195
||||||||||| |||||||| || |||||||| | || || | ||||| |
Sbjct 4056 AACCTGAACCGCATCATCGACGTCAACTACTACCCCGTCAAGGAGGCCGAGCGCA---GC 4112
Query 55196 AACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATG 55255
||| |||| ||||| || |||| |||||||| |||||| | |||||| |||||||
Sbjct 4113 AACTTCCGCCACCGCCCGATCGGTATCGGTGTGCAGGGCCTCGCCGACGCCTTCATGGCC 4172
Query 55256 CTCGGATTGCCCTTCGACTCG 55276
||| | |||| |||||||||
Sbjct 4173 CTCCGCCTGCCGTTCGACTCG 4193
>seq8
Length=1023559
Score = 132 bits (146), Expect = 5e-26
Identities = 138/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||||||||| |||| ||||||||| |||||||| ||| || ||||| || |||||
Sbjct 36311 GTGAAGATGTAACGGGCGCTGGCCGCGTCCTTGCCGCCTTGAAGACGCGTACCGAACTGG 36252
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
|| || ||||| | ||||| ||||||| ||| ||||| ||||| || | ||
Sbjct 36251 CCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCCGACG 36192
Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208
||||||||||| || || || |||||||| ||||||| ||||||| |||||| |||
Sbjct 36191 ATCGTGCCCTGGAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTAGCCC 36132
Query 152209 G 152209
|
Sbjct 36131 G 36131
Score = 120 bits (132), Expect = 3e-22
Identities = 144/196 (73%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| |||||||| | ||| || || |||||||| || ||||||||||||||| ||
Sbjct 36311 GTGAAGATGTAACGGGCGCTGGCCGCGTCCTTGCCGCCTTGAAGACGCGTACCGAACTGG 36252
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| |||| || | | ||| | ||||||| ||| || ||||| || || | | |||
Sbjct 36251 CCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCCGACG 36192
Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484
||||| || ||||| || || || ||||| ||||||| ||||||| | |||||||
Sbjct 36191 ATCGTGCCCTGGAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTAGCCC 36132
Query 117485 GCCAGCTGAGCCACCT 117500
| ||||| | ||||
Sbjct 36131 GAAAGCTGGCCGACCT 36116
Score = 89.7 bits (98), Expect = 6e-13
Identities = 85/107 (79%), Gaps = 4/107 (4%)
Strand=Plus/Minus
Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG--CTCCTCGTCG 119140
|||||| |||||||| ||||| |||||||| ||||| ||| | || ||| ||||||
Sbjct 34011 GTTGGCGAGCTTGGCGCCGTAGCCGTTCCGTCCACCCGTC--GTCTTGGCCTCGTCGTCG 33954
Query 119141 TTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187
| |||||| ||| ||| | |||| ||||||||||||||||||||
Sbjct 33953 TCGTAGTTCGAGGAGGTGAGGAGGTTGCCAAAGATGAGCTCGGGGAT 33907
>seq16
Length=742613
Score = 122 bits (134), Expect = 1e-22
Identities = 108/135 (80%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTG 159002
||||||||||| | ||| ||||| |||||||| | |||||||| || || | |||
Sbjct 591393 AAACTCGCGGACGGGGTGGGTCTCGCCAGTCGCGAGGACAAAGTCATCGGGCTGGTCCTG 591452
Query 159003 TTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGC 159062
||||||||| |||||||| |||||||||| || | ||||| |||||||||||||||||
Sbjct 591453 CTGGAGCATGCGCCACATGCCCTCGACGTAGTCGCGAGCGTGTCCCCAGTCGCGCTTGGC 591512
Query 159063 ATCCATGTTCCCGAG 159077
|| | ||| |||||
Sbjct 591513 GTCGAGGTTGCCGAG 591527
Score = 89.7 bits (98), Expect = 6e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540
|||| ||||| |||||| |||| | ||| ||||| || || | | || || || ||
Sbjct 591381 CGCCTTCTCGACAAACTCGCGGACGGGGTGGGTCTCGCCAGTCGCGAGGACAAAGTCATC 591440
Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600
||| |||||| | ||| |||||||| | | ||||||||| ||||| |||||
Sbjct 591441 GGGCTGGTCCTGCTGGAGCATGCGCCACATGCCCTCGACGTAGTCGCGAGCGTGTCCCCA 591500
Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAG 124627
|||||||||||| || ||||| |||||
Sbjct 591501 GTCGCGCTTGGCGTCGAGGTTGCCGAG 591527
>seq7
Length=1146271
Score = 107 bits (118), Expect = 2e-18
Identities = 107/136 (79%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGC-T 159001
||||||||||| | ||||||||| || || || | ||| |||| || || | || | |
Sbjct 203728 AAACTCGCGGACGGGGTGCGTCTCGCCGGTTGCGAGGACATAGTCGTCCGG-CTGGTCTT 203786
Query 159002 GTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGG 159061
| || | |||| |||||||| | |||||||| || ||||||| ||||||||||||||||
Sbjct 203787 GCTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCCAGTCGCGCTTGG 203846
Query 159062 CATCCATGTTCCCGAG 159077
|||| | ||| |||||
Sbjct 203847 CATCGAGGTTGCCGAG 203862
Score = 102 bits (112), Expect = 9e-17
Identities = 113/148 (76%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540
|||| ||||| |||||| |||| | ||||||||| || || | | || | || ||
Sbjct 203716 CGCCTTCTCGACAAACTCGCGGACGGGGTGCGTCTCGCCGGTTGCGAGGACATAGTCGTC 203775
Query 124541 GGGAATCGACT-GCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCC 124599
|| | | || |||||||||| |||||||| ||| ||||||||| ||||| ||||
Sbjct 203776 CGGC-TGGTCTTGCTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCC 203834
Query 124600 AGTCGCGCTTGGCATCCAGGTTTCCGAG 124627
|||||||||||||||| ||||| |||||
Sbjct 203835 AGTCGCGCTTGGCATCGAGGTTGCCGAG 203862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215637469400
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