Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq25 358 7e-94 seq8 132 5e-26 seq16 122 1e-22 seq7 107 2e-18 >seq25 Length=115453 Score = 358 bits (396), Expect = 7e-94 Identities = 515/719 (72%), Gaps = 8/719 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC--TACACGCGTGTCCGTGAGACGTA 53250 ||||||| ||||| | || |||||||| |||||| | |||| | || ||||||| Sbjct 3020 TCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAGCGCGCGATCG--AGACGTA 3077 Query 53251 CGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 | || | ||| | |||||||||||||||| |||| || || |||||||| || || Sbjct 3078 CAACCTCATGTCGGAGCGGTACTTTACGCACGCCTCGCCGACGCTCTTCAACGCCGGCAC 3137 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 | ||||| ||| | ||| |||||||| || |||||||||| ||||||||||| || Sbjct 3138 GCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTCGATCGAGGG 3197 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 ||||||||| ||||||||| ||| || | |||||||||| | | || || |||||| | Sbjct 3198 CATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCCGGCGGCATCGGTCT 3257 Query 53431 C-CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 | | | | | ||| |||| |||| |||| | ||| || ||||||||| | | Sbjct 3258 CTCGATCCAC-AACATCCGCGCGACCGGCTCGTACATCGCCGGCACGAACGGCTACTCGA 3316 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 | || ||| | || ||||||||||| | ||||||||| || || |||||| ||||||| | Sbjct 3317 ACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGCTACGTCGACCAGGGCG 3376 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | |||||| ||| ||||||||||||||||||||||||||||||||||||| | | Sbjct 3377 GCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATCTTCG 3436 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTA 53669 |||| ||||| || || ||| || || | || ||| | ||| || ||| |||| Sbjct 3437 AGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCGCGCGACTTGTTCT 3496 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 || || |||||||| |||||||||||| | || ||| || ||| || ||| || Sbjct 3497 TTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAGAACGGCGACTGGCCCC 3556 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 | | ||||| |||| ||||||||||| | |||||||| || ||||| || ||| Sbjct 3557 TCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGGCGACGAGTTCAAGGAGC 3616 Query 53790 TGTATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTA 53848 ||| ||| || ||| | |||| ||| |||| | | || | || | Sbjct 3617 TGT-TCGAGAAGTATGAGAAGGAGGGTCGCGCCAAGCGCACCATTCCCGCCCAGAAGCTC 3675 Query 53849 TGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGA 53907 ||| | || |||||| || |||||| |||||||| | || | |||| ||||||||| Sbjct 3676 TGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCATGCTCTACAAGGA 3734 Score = 159 bits (176), Expect = 4e-34 Identities = 323/465 (69%), Gaps = 21/465 (5%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| || || || || ||||| ||||||||||| |||||| | Sbjct 4437 GGCATCCGCAACTCGCTCGTCTGCGCACCGATGCCGACCGCGTCGACTAGCCAGATCCTC 4496 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 ||| ||||||||||||||||||||||||| ||||||||||| ||||| ||| || Sbjct 4497 GGCTTCAACGAGGCGTTCGAGCCGTACACGTCCAACATCTACACCCGCCGTGTCCTCGCC 4556 Query 55598 GGTGAGTTTGTCATGATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAG 55654 || ||||| || | || ||| | | ||| || ||||| | | | | Sbjct 4557 GGCGAGTTC--CAGG-TCGTCAACCCCTGGCTCCTCCGCGACCTCGTCGACCGCGGCCTG 4613 Query 55655 TGGAACC-CGCAGATCAAGACG--GAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCT 55710 |||||| ||| ||| |||| ||| || | || ||||| || ||||||| | Sbjct 4614 TGGAACGACGC-GATGAAGAACACGATCATCGCGCACAACGGC---TCGATCCAGAACGT 4669 Query 55711 G---GAGATTCCTC-TGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA 55766 | || ||| || | |||||| || ||| ||||||||||||||| | |||| Sbjct 4670 CCCCGGTATCCCTGATGAG-CTCAAGCGCATCTACAAGACGGTGTGGGAGATCTCGCAGA 4728 Query 55767 AGAGTC-TGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTG 55825 || ||| | || ||| | || || || || |||| |||||||||||| ||||| || Sbjct 4729 AG-GTCGTCATCGACCTCTCCGCCGACCGCGGAGCGTTCATCGACCAGTCGCAGTCGCTC 4787 Query 55826 AACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGG 55885 ||| || | | | || | |||| || | | ||||||||||| ||||| ||| Sbjct 4788 AACGTCCACCTCTCGTCGCCGACCATGGCGCAGCTCACGTCGATGCACTTCTACGGCTGG 4847 Query 55886 AAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCC 55930 |||||||| ||||||||||| |||||||| || || ||||||||| Sbjct 4848 AAGAAGGGTCTCAAGACGGGCATGTACTACCTCCGTACCCGCGCC 4892 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/141 (74%), Gaps = 6/141 (4%) Strand=Plus/Plus Query 55139 AACCTGAACCGGGTCATCGACAAGAATTACTACCC---GACTGAAGCGGCGCGCAAGTCC 55195 ||||||||||| |||||||| || |||||||| | || || | ||||| | Sbjct 4056 AACCTGAACCGCATCATCGACGTCAACTACTACCCCGTCAAGGAGGCCGAGCGCA---GC 4112 Query 55196 AACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATG 55255 ||| |||| ||||| || |||| |||||||| |||||| | |||||| ||||||| Sbjct 4113 AACTTCCGCCACCGCCCGATCGGTATCGGTGTGCAGGGCCTCGCCGACGCCTTCATGGCC 4172 Query 55256 CTCGGATTGCCCTTCGACTCG 55276 ||| | |||| ||||||||| Sbjct 4173 CTCCGCCTGCCGTTCGACTCG 4193 >seq8 Length=1023559 Score = 132 bits (146), Expect = 5e-26 Identities = 138/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| ||||||||| |||||||| ||| || ||||| || ||||| Sbjct 36311 GTGAAGATGTAACGGGCGCTGGCCGCGTCCTTGCCGCCTTGAAGACGCGTACCGAACTGG 36252 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || || ||||| | ||||| ||||||| ||| ||||| ||||| || | || Sbjct 36251 CCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCCGACG 36192 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 ||||||||||| || || || |||||||| ||||||| ||||||| |||||| ||| Sbjct 36191 ATCGTGCCCTGGAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTAGCCC 36132 Query 152209 G 152209 | Sbjct 36131 G 36131 Score = 120 bits (132), Expect = 3e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| || || |||||||| || ||||||||||||||| || Sbjct 36311 GTGAAGATGTAACGGGCGCTGGCCGCGTCCTTGCCGCCTTGAAGACGCGTACCGAACTGG 36252 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | | ||| | ||||||| ||| || ||||| || || | | ||| Sbjct 36251 CCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCCGACG 36192 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| || ||||| || || || ||||| ||||||| ||||||| | ||||||| Sbjct 36191 ATCGTGCCCTGGAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTAGCCC 36132 Query 117485 GCCAGCTGAGCCACCT 117500 | ||||| | |||| Sbjct 36131 GAAAGCTGGCCGACCT 36116 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/107 (79%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG--CTCCTCGTCG 119140 |||||| |||||||| ||||| |||||||| ||||| ||| | || ||| |||||| Sbjct 34011 GTTGGCGAGCTTGGCGCCGTAGCCGTTCCGTCCACCCGTC--GTCTTGGCCTCGTCGTCG 33954 Query 119141 TTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 | |||||| ||| ||| | |||| |||||||||||||||||||| Sbjct 33953 TCGTAGTTCGAGGAGGTGAGGAGGTTGCCAAAGATGAGCTCGGGGAT 33907 >seq16 Length=742613 Score = 122 bits (134), Expect = 1e-22 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTG 159002 ||||||||||| | ||| ||||| |||||||| | |||||||| || || | ||| Sbjct 591393 AAACTCGCGGACGGGGTGGGTCTCGCCAGTCGCGAGGACAAAGTCATCGGGCTGGTCCTG 591452 Query 159003 TTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGC 159062 ||||||||| |||||||| |||||||||| || | ||||| ||||||||||||||||| Sbjct 591453 CTGGAGCATGCGCCACATGCCCTCGACGTAGTCGCGAGCGTGTCCCCAGTCGCGCTTGGC 591512 Query 159063 ATCCATGTTCCCGAG 159077 || | ||| ||||| Sbjct 591513 GTCGAGGTTGCCGAG 591527 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||||| |||||| |||| | ||| ||||| || || | | || || || || Sbjct 591381 CGCCTTCTCGACAAACTCGCGGACGGGGTGGGTCTCGCCAGTCGCGAGGACAAAGTCATC 591440 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 ||| |||||| | ||| |||||||| | | ||||||||| ||||| ||||| Sbjct 591441 GGGCTGGTCCTGCTGGAGCATGCGCCACATGCCCTCGACGTAGTCGCGAGCGTGTCCCCA 591500 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAG 124627 |||||||||||| || ||||| ||||| Sbjct 591501 GTCGCGCTTGGCGTCGAGGTTGCCGAG 591527 >seq7 Length=1146271 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGC-T 159001 ||||||||||| | ||||||||| || || || | ||| |||| || || | || | | Sbjct 203728 AAACTCGCGGACGGGGTGCGTCTCGCCGGTTGCGAGGACATAGTCGTCCGG-CTGGTCTT 203786 Query 159002 GTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGG 159061 | || | |||| |||||||| | |||||||| || ||||||| |||||||||||||||| Sbjct 203787 GCTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCCAGTCGCGCTTGG 203846 Query 159062 CATCCATGTTCCCGAG 159077 |||| | ||| ||||| Sbjct 203847 CATCGAGGTTGCCGAG 203862 Score = 102 bits (112), Expect = 9e-17 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||||| |||||| |||| | ||||||||| || || | | || | || || Sbjct 203716 CGCCTTCTCGACAAACTCGCGGACGGGGTGCGTCTCGCCGGTTGCGAGGACATAGTCGTC 203775 Query 124541 GGGAATCGACT-GCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCC 124599 || | | || |||||||||| |||||||| ||| ||||||||| ||||| |||| Sbjct 203776 CGGC-TGGTCTTGCTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCC 203834 Query 124600 AGTCGCGCTTGGCATCCAGGTTTCCGAG 124627 |||||||||||||||| ||||| ||||| Sbjct 203835 AGTCGCGCTTGGCATCGAGGTTGCCGAG 203862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215637469400