Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq25 203 4e-47 seq8 165 9e-36 seq5 116 4e-21 seq6 113 5e-20 seq17 111 2e-19 seq15 98.7 1e-15 seq16 84.2 2e-11 >seq25 Length=115453 Score = 203 bits (224), Expect = 4e-47 Identities = 491/737 (67%), Gaps = 15/737 (2%) Strand=Plus/Minus Query 81022 GCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCC 81081 |||||||||||| |||| | ||| | || ||||||||||| | || ||||||||||| | Sbjct 3737 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTAC 3678 Query 81082 CAAATCTC----GCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGC 81137 || | || ||| | | | | | | ||| | ||||| ||||||| | Sbjct 3677 CAGAGCTTCTGGGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCT----CATACTTCTC 3622 Query 81138 GTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGC 81196 | | |||| | | ||||| | | |||| | || |||| | || |||| ||||| Sbjct 3621 GAACAGCTCCTT-GAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGC 3563 Query 81197 ACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGA 81256 | | ||| |||||||| || | ||| ||| || |||||| ||| || ||||||| Sbjct 3562 AGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGA 3503 Query 81257 GGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGA 81316 |||| ||||| |||||| ||| ||||||| | || ||||| ||| | |||| Sbjct 3502 GGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGA 3443 Query 81317 GAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG-- 81374 | || || | |||||| || ||||| ||||| || || | ||||| || ||| ||| Sbjct 3442 GGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCT 3383 Query 81375 -ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGA 81433 ||| ||||||| |||||| || || || ||| | || || | ||| ||||||| Sbjct 3382 TGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGA 3323 Query 81434 TACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGA 81493 | || | || | |||||||| || |||| ||| || | ||||| | ||| || Sbjct 3322 TGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGA 3263 Query 81494 TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCAT 81553 | || ||||||||||| || | | ||| || || | || ||| || | || || | Sbjct 3262 TCGAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGT 3203 Query 81554 AAATTCCCTCGATGCTATCTTTTTTCAT-GTCAAGCAAGAAACAGCTTGACATCTGAGGG 81612 | || |||||||| || | ||||| || | | | ||| || || | ||| ||| Sbjct 3202 AGATGCCCTCGATCGAGTCGTCCTTCATCGTGACG-AGGAAGCACGACGAGAGCTGCGGG 3144 Query 81613 CTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATC 81672 | |||||| ||||| || || || | ||||| | || || || | ||||| Sbjct 3143 TGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATG 3084 Query 81673 AGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGC 81732 |||| || || || | |||| ||| ||||| ||||| || |||| || |||||| Sbjct 3083 AGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACGC 3024 Query 81733 ATAAACATGTACTGGGG 81749 || | ||||| ||| || Sbjct 3023 ATGAGCATGTGCTGCGG 3007 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 80679 GCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTG 80738 |||||||| || |||||||| || || | |||||| |||| || |||||||| Sbjct 4205 GCGCGCCTCGGGCGAGTCGAACGGCAGGCGGAGGGCCATGAAGGCGTCGGCGAGGCCCTG 4146 Query 80739 AACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTA 80798 || ||||| |||||||||||||||| ||| |||||||||||| | ||||| Sbjct 4145 CACACCGATACCGATCGGGCGGTGGCGGAAGTTGCTGCGCTCGGCCTCCTTGACGGGGTA 4086 Query 80799 AAAGTTATTATCGATGACGCGGTTCAGGTTG 80829 |||| ||||||| ||||||||||||| Sbjct 4085 GTAGTTGACGTCGATGATGCGGTTCAGGTTG 4055 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 || || || || || |||||||||||||||||||| ||||||||||||||||| | |||| Sbjct 4891 GCGCGGGTACGGAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGC 4832 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || || |||||| ||| | || || | | | || ||| || ||||| ||||| Sbjct 4831 ATCGACGTGAGCTGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGG 4772 Query 80152 CAGATGAAAGCCCCACGATCTGC 80174 |||||| || || || || || Sbjct 4771 TCGATGAACGCTCCGCGGTCGGC 4749 >seq8 Length=1023559 Score = 165 bits (182), Expect = 9e-36 Identities = 211/289 (73%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113 |||| | ||||| ||||||||| | | ||||| |||| || ||||||||||| || | Sbjct 36116 AGGTCGGCCAGCTTTCGGGCTACATCTCGGAGCACTCGGCGTACCACCACGGCGACGCCT 36175 Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173 ||||||||||||| || ||| ||| || |||||||| ||||| || ||| | ||| Sbjct 36176 CGCTCCAGGGCACGATCGTCGGCCTCGCGCAGAACTTCGTCGGCAGCAACAACATCAACG 36235 Query 32174 TACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCT 32233 | ||||| || || ||||| || || || || || |||||||| || || ||| Sbjct 36236 TGCTCGACCCGAACGGCCAGTTCGGTACGCGTCTTCAAGGCGGCAAGGACGCGGCCAGCG 36295 Query 32234 CCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGA 32291 |||||||||||||||| |||| |||| | ||||||| | | ||| |||||||||| Sbjct 36296 CCCGTTACATCTTCACAAACGTCGCGCAGAT--CACGCGCACGCTCTTCCACCCGTCGGA 36353 Query 32292 CGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340 ||| || | ||| | ||| |||||||| ||| | |||||||| Sbjct 36354 CGACGCCATCCTCGACTACCTCAACGATGACGGGCAGAGCATCGAGCCG 36402 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/113 (77%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 30361 ATCTGGATCCCCGAACTCATTTTTGGGCACCTTTTGACAAGCTCCAACTACAACGACGAG 30420 |||| |||||||| ||||| ||||| |||| | || ||| |||||| ||||||| Sbjct 33901 ATCTACATCCCCGAGCTCATCTTTGGCAACCTCCTCACCTCCTCGAACTACGACGACGAC 33960 Query 30421 GAG--CAGCGCGTGACGGGTGGACGAAATGGCTACGGTGCAAAGCTCGCCAAC 30471 ||| || || ||||||||||| || |||||||| || |||||||||||| Sbjct 33961 GAGGCCAAGACG--ACGGGTGGACGGAACGGCTACGGCGCCAAGCTCGCCAAC 34011 >seq5 Length=1227376 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || ||||| |||||||||||||| || || || Sbjct 829036 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCGCG 829095 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | |||||| || | || || || |||| || || || || Sbjct 829096 GGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACG 829155 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || ||||||| ||||| || Sbjct 829156 CTCCACCTCGTGCTGCGTCTCCGCGGAGG 829184 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501 || || || ||||| ||||| || | |||| || | ||||| || || |||||| Sbjct 829304 ATCACCCTCGAGGTCGAGTCGTCGGACACGATTGACAACGTCAAGGCCAAGATCCAGGAC 829363 Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561 |||||||| ||||| || ||||||||||| | || || || || ||||| || ||||| Sbjct 829364 AAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGAC 829423 Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 | || || || | ||||| ||| | || ||||| || || || || | || | ||| Sbjct 829424 GGACGCACGCTTTCGGACTACAATATTCAGAAGGAGTCGACGCTGCACTTGGTGCTTCGT 829483 Query 27622 CTTCGCGGTGG 27632 ||||||||||| Sbjct 829484 CTTCGCGGTGG 829494 Score = 102 bits (112), Expect = 9e-17 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| ||||| || ||||||||||| | || || || Sbjct 830509 AAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCC 830568 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCAC 27602 || ||||| || ||||| | || || || ||| |||||||| | || ||||| || || Sbjct 830569 GGCAAGCAGCTTGAGGACGGGCGCACGCTCAGC-GACTATAACATTCAGAAGGAGTCGAC 830627 Query 27603 TCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || | ||||| |||||||| Sbjct 830628 GCTGCACCTGGTGCTTCGTCTCCGCGGTGG 830657 >seq6 Length=1203005 Score = 113 bits (124), Expect = 5e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||||||||| Sbjct 884091 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCC 884032 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || ||||||||||||||||| || ||||| |||||| Sbjct 884031 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 883972 Query 27526 CAGCG 27530 ||||| Sbjct 883971 CAGCG 883967 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501 || || || ||||||||||| || | |||| || | ||||| || || |||||| Sbjct 882839 ATCACCCTCGAGGTTGAGTCGTCCGACACGATTGACAACGTCAAGGCCAAGATCCAGGAC 882780 Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561 |||||||| || ||||| ||||||||||| | || || || || ||||| || ||||| Sbjct 882779 AAGGAGGGCATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGAC 882720 Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 | || ||| | | || || || ||||||||||||| || || || || || ||| | Sbjct 882719 GGACGCACCTTGTCGGATTACAACATCCAAAAGGAATCGACCCTGCACCTCGTTTTGAGG 882660 Query 27622 CTTCGCGGTGG 27632 | |||||||| Sbjct 882659 TTGCGCGGTGG 882649 >seq17 Length=551157 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || || || ||||||||||| | || || || Sbjct 51227 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCGCC 51286 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | || || || | ||||| || |||| ||||| || || Sbjct 51287 GGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACC 51346 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || ||| | |||||||||||||| Sbjct 51347 CTCCACCTCGTCCTCCGTCTTCGCGGTGG 51375 >seq15 Length=767120 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || || || ||||||||||| || || ||||| Sbjct 225927 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCC 225868 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | || || || | ||||| || | || ||||| || || Sbjct 225867 GGCAAGCAGCTCGAGGACGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACC 225808 Query 27604 CTTCATCTAGTC 27615 ||||| || ||| Sbjct 225807 CTTCACCTCGTC 225796 >seq16 Length=742613 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24990 CTGGGAAACCTAGATGCCAAACGTGATTGGGGGCATGCAGCCGACTACGTCGACGCCATG 25049 || || ||||| || ||||| || || ||||| || || |||||||||||| | |||| Sbjct 591527 CTCGGCAACCTCGACGCCAAGCGCGACTGGGGACACGCTCGCGACTACGTCGAGGGCATG 591468 Query 25050 TGGCGCATGCTCCAACAGAATAAGCCAGAGGATTTTGTGATCGGCACCGGTCAGACGCA 25108 |||||||||||||| ||| | |||| || || ||||| ||| || || |||| || Sbjct 591467 TGGCGCATGCTCCAGCAGGACCAGCCCGATGACTTTGTCCTCGCGACTGGCGAGACCCA 591409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310022169360