Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq25 203 4e-47
seq8 165 9e-36
seq5 116 4e-21
seq6 113 5e-20
seq17 111 2e-19
seq15 98.7 1e-15
seq16 84.2 2e-11
>seq25
Length=115453
Score = 203 bits (224), Expect = 4e-47
Identities = 491/737 (67%), Gaps = 15/737 (2%)
Strand=Plus/Minus
Query 81022 GCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCC 81081
|||||||||||| |||| | ||| | || ||||||||||| | || ||||||||||| |
Sbjct 3737 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTAC 3678
Query 81082 CAAATCTC----GCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGC 81137
|| | || ||| | | | | | | ||| | ||||| ||||||| |
Sbjct 3677 CAGAGCTTCTGGGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCT----CATACTTCTC 3622
Query 81138 GTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGC 81196
| | |||| | | ||||| | | |||| | || |||| | || |||| |||||
Sbjct 3621 GAACAGCTCCTT-GAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGC 3563
Query 81197 ACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGA 81256
| | ||| |||||||| || | ||| ||| || |||||| ||| || |||||||
Sbjct 3562 AGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGA 3503
Query 81257 GGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGA 81316
|||| ||||| |||||| ||| ||||||| | || ||||| ||| | ||||
Sbjct 3502 GGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGA 3443
Query 81317 GAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG-- 81374
| || || | |||||| || ||||| ||||| || || | ||||| || ||| |||
Sbjct 3442 GGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCT 3383
Query 81375 -ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGA 81433
||| ||||||| |||||| || || || ||| | || || | ||| |||||||
Sbjct 3382 TGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGA 3323
Query 81434 TACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGA 81493
| || | || | |||||||| || |||| ||| || | ||||| | ||| ||
Sbjct 3322 TGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGA 3263
Query 81494 TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCAT 81553
| || ||||||||||| || | | ||| || || | || ||| || | || || |
Sbjct 3262 TCGAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGT 3203
Query 81554 AAATTCCCTCGATGCTATCTTTTTTCAT-GTCAAGCAAGAAACAGCTTGACATCTGAGGG 81612
| || |||||||| || | ||||| || | | | ||| || || | ||| |||
Sbjct 3202 AGATGCCCTCGATCGAGTCGTCCTTCATCGTGACG-AGGAAGCACGACGAGAGCTGCGGG 3144
Query 81613 CTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATC 81672
| |||||| ||||| || || || | ||||| | || || || | |||||
Sbjct 3143 TGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATG 3084
Query 81673 AGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGC 81732
|||| || || || | |||| ||| ||||| ||||| || |||| || ||||||
Sbjct 3083 AGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACGC 3024
Query 81733 ATAAACATGTACTGGGG 81749
|| | ||||| ||| ||
Sbjct 3023 ATGAGCATGTGCTGCGG 3007
Score = 93.3 bits (102), Expect = 5e-14
Identities = 111/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 80679 GCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTG 80738
|||||||| || |||||||| || || | |||||| |||| || ||||||||
Sbjct 4205 GCGCGCCTCGGGCGAGTCGAACGGCAGGCGGAGGGCCATGAAGGCGTCGGCGAGGCCCTG 4146
Query 80739 AACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTA 80798
|| ||||| |||||||||||||||| ||| |||||||||||| | |||||
Sbjct 4145 CACACCGATACCGATCGGGCGGTGGCGGAAGTTGCTGCGCTCGGCCTCCTTGACGGGGTA 4086
Query 80799 AAAGTTATTATCGATGACGCGGTTCAGGTTG 80829
|||| ||||||| |||||||||||||
Sbjct 4085 GTAGTTGACGTCGATGATGCGGTTCAGGTTG 4055
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
|| || || || || |||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct 4891 GCGCGGGTACGGAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGC 4832
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| || |||||| ||| | || || | | | || ||| || ||||| |||||
Sbjct 4831 ATCGACGTGAGCTGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGG 4772
Query 80152 CAGATGAAAGCCCCACGATCTGC 80174
|||||| || || || || ||
Sbjct 4771 TCGATGAACGCTCCGCGGTCGGC 4749
>seq8
Length=1023559
Score = 165 bits (182), Expect = 9e-36
Identities = 211/289 (73%), Gaps = 4/289 (1%)
Strand=Plus/Plus
Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113
|||| | ||||| ||||||||| | | ||||| |||| || ||||||||||| || |
Sbjct 36116 AGGTCGGCCAGCTTTCGGGCTACATCTCGGAGCACTCGGCGTACCACCACGGCGACGCCT 36175
Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173
||||||||||||| || ||| ||| || |||||||| ||||| || ||| | |||
Sbjct 36176 CGCTCCAGGGCACGATCGTCGGCCTCGCGCAGAACTTCGTCGGCAGCAACAACATCAACG 36235
Query 32174 TACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCT 32233
| ||||| || || ||||| || || || || || |||||||| || || |||
Sbjct 36236 TGCTCGACCCGAACGGCCAGTTCGGTACGCGTCTTCAAGGCGGCAAGGACGCGGCCAGCG 36295
Query 32234 CCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGA 32291
|||||||||||||||| |||| |||| | ||||||| | | ||| ||||||||||
Sbjct 36296 CCCGTTACATCTTCACAAACGTCGCGCAGAT--CACGCGCACGCTCTTCCACCCGTCGGA 36353
Query 32292 CGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340
||| || | ||| | ||| |||||||| ||| | ||||||||
Sbjct 36354 CGACGCCATCCTCGACTACCTCAACGATGACGGGCAGAGCATCGAGCCG 36402
Score = 82.4 bits (90), Expect = 9e-11
Identities = 87/113 (77%), Gaps = 4/113 (4%)
Strand=Plus/Plus
Query 30361 ATCTGGATCCCCGAACTCATTTTTGGGCACCTTTTGACAAGCTCCAACTACAACGACGAG 30420
|||| |||||||| ||||| ||||| |||| | || ||| |||||| |||||||
Sbjct 33901 ATCTACATCCCCGAGCTCATCTTTGGCAACCTCCTCACCTCCTCGAACTACGACGACGAC 33960
Query 30421 GAG--CAGCGCGTGACGGGTGGACGAAATGGCTACGGTGCAAAGCTCGCCAAC 30471
||| || || ||||||||||| || |||||||| || ||||||||||||
Sbjct 33961 GAGGCCAAGACG--ACGGGTGGACGGAACGGCTACGGCGCCAAGCTCGCCAAC 34011
>seq5
Length=1227376
Score = 116 bits (128), Expect = 4e-21
Identities = 115/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || |||||||||||||| || ||||| |||||||||||||| || || ||
Sbjct 829036 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCGCG 829095
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| |||||||| | |||||| || | || || || |||| || || || ||
Sbjct 829096 GGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACG 829155
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || || ||||||| ||||| ||
Sbjct 829156 CTCCACCTCGTGCTGCGTCTCCGCGGAGG 829184
Score = 105 bits (116), Expect = 8e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501
|| || || ||||| ||||| || | |||| || | ||||| || || ||||||
Sbjct 829304 ATCACCCTCGAGGTCGAGTCGTCGGACACGATTGACAACGTCAAGGCCAAGATCCAGGAC 829363
Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561
|||||||| ||||| || ||||||||||| | || || || || ||||| || |||||
Sbjct 829364 AAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGAC 829423
Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621
| || || || | ||||| ||| | || ||||| || || || || | || | |||
Sbjct 829424 GGACGCACGCTTTCGGACTACAATATTCAGAAGGAGTCGACGCTGCACTTGGTGCTTCGT 829483
Query 27622 CTTCGCGGTGG 27632
|||||||||||
Sbjct 829484 CTTCGCGGTGG 829494
Score = 102 bits (112), Expect = 9e-17
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || |||||||||||||| ||||| || ||||||||||| | || || ||
Sbjct 830509 AAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCC 830568
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCAC 27602
|| ||||| || ||||| | || || || ||| |||||||| | || ||||| || ||
Sbjct 830569 GGCAAGCAGCTTGAGGACGGGCGCACGCTCAGC-GACTATAACATTCAGAAGGAGTCGAC 830627
Query 27603 TCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || || | ||||| ||||||||
Sbjct 830628 GCTGCACCTGGTGCTTCGTCTCCGCGGTGG 830657
>seq6
Length=1203005
Score = 113 bits (124), Expect = 5e-20
Identities = 100/125 (80%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || ||||||||||| || || || |||||||||||
Sbjct 884091 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCC 884032
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| | ||||| || ||||||||||||||||| || ||||| ||||||
Sbjct 884031 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 883972
Query 27526 CAGCG 27530
|||||
Sbjct 883971 CAGCG 883967
Score = 111 bits (122), Expect = 2e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501
|| || || ||||||||||| || | |||| || | ||||| || || ||||||
Sbjct 882839 ATCACCCTCGAGGTTGAGTCGTCCGACACGATTGACAACGTCAAGGCCAAGATCCAGGAC 882780
Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561
|||||||| || ||||| ||||||||||| | || || || || ||||| || |||||
Sbjct 882779 AAGGAGGGCATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGAC 882720
Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621
| || ||| | | || || || ||||||||||||| || || || || || ||| |
Sbjct 882719 GGACGCACCTTGTCGGATTACAACATCCAAAAGGAATCGACCCTGCACCTCGTTTTGAGG 882660
Query 27622 CTTCGCGGTGG 27632
| ||||||||
Sbjct 882659 TTGCGCGGTGG 882649
>seq17
Length=551157
Score = 111 bits (122), Expect = 2e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || |||||||||||||| || || || ||||||||||| | || || ||
Sbjct 51227 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCGCC 51286
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| |||||||| | || || || | ||||| || |||| ||||| || ||
Sbjct 51287 GGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACC 51346
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || ||| | ||||||||||||||
Sbjct 51347 CTCCACCTCGTCCTCCGTCTTCGCGGTGG 51375
>seq15
Length=767120
Score = 98.7 bits (108), Expect = 1e-15
Identities = 101/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || |||||||||||||| || || || ||||||||||| || || |||||
Sbjct 225927 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCC 225868
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| |||||||| | || || || | ||||| || | || ||||| || ||
Sbjct 225867 GGCAAGCAGCTCGAGGACGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACC 225808
Query 27604 CTTCATCTAGTC 27615
||||| || |||
Sbjct 225807 CTTCACCTCGTC 225796
>seq16
Length=742613
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 24990 CTGGGAAACCTAGATGCCAAACGTGATTGGGGGCATGCAGCCGACTACGTCGACGCCATG 25049
|| || ||||| || ||||| || || ||||| || || |||||||||||| | ||||
Sbjct 591527 CTCGGCAACCTCGACGCCAAGCGCGACTGGGGACACGCTCGCGACTACGTCGAGGGCATG 591468
Query 25050 TGGCGCATGCTCCAACAGAATAAGCCAGAGGATTTTGTGATCGGCACCGGTCAGACGCA 25108
|||||||||||||| ||| | |||| || || ||||| ||| || || |||| ||
Sbjct 591467 TGGCGCATGCTCCAGCAGGACCAGCCCGATGACTTTGTCCTCGCGACTGGCGAGACCCA 591409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310022169360
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