Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq16 111 1e-19
>seq16
Length=742613
Score = 111 bits (122), Expect = 1e-19
Identities = 133/178 (75%), Gaps = 2/178 (1%)
Strand=Plus/Plus
Query 29857 CCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAG 29916
|| ||||||||| ||||| ||||| || |||| || ||||||||||| ||||| || ||
Sbjct 243069 CCGCTCGAGCTGCGTCTTGAGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCGAG 243128
Query 29917 GTTGTGGACAAACTCTCCCGGT-TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 29975
| | ||| ||||| |||| || | |||||||| | || ||||||| ||| ||||
Sbjct 243129 TTGGAGGATGAACTCATGCGGTATCGTG-TCGGTGACGAGGGCGATCATGTGCGTCAGGA 243187
Query 29976 GAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 30033
| | ||| ||||||||| ||||| || ||||| || | ||| | || | ||||||
Sbjct 243188 GGGCGTACGAGGCGATGTTGAAGGGCACGCCGAGGCCGAGGTCGGCAGAGCGCTGGTA 243245
Score = 109 bits (120), Expect = 4e-19
Identities = 144/197 (73%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 30261 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30320
||||||| || ||||||| || ||| |||||| ||||| ||||| | | ||| | |
Sbjct 243630 ACCCGTAGACGGGTCCCAAATCACCCACTTCCCGGTGCTGCAAGCCGCGCGAGTCGAGGA 243689
Query 30321 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGT 30380
| |||| | |||||| | ||||||||||| || |||||||| | | | | || ||||
Sbjct 243690 ACTCTCGGCTGCCGTTGCCATCCCAGATCTTGACGCCCTTCTCCGCCAACACCTTCGAGT 243749
Query 30381 TTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 30439
||| | ||||| ||| ||||||| ||||||||| | || | | | ||||||| |
Sbjct 243750 CGGTGCATCCCTC-GACAAACCACAACAGCTCCTCGATGATGCCGCGCGAAAAGACGCGT 243808
Query 30440 TTGGTCGTGAGGAGGGG 30456
|||||||| | ||| ||
Sbjct 243809 TTGGTCGTCAAGAGCGG 243825
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406310137548876
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |