Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq6 105 6e-18 seq5 93.3 4e-14 >seq6 Length=1203005 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 || || || || || || |||||||| ||||||| | ||||| || || || ||| Sbjct 882839 ATCACCCTCGAGGTTGAGTCGTCCGACACGATTGACAACGTCAAGGCCAAGATCCAGGAC 882780 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || || ||||| || ||||| || ||||| || || | ||| || || || | || ||| Sbjct 882779 AAGGAGGGCATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGAC 882720 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 | ||| | || ||||||||||| |||||||| |||||| | || | |||||| | Sbjct 882719 GGACGCACCTTGTCGGATTACAACATCCAAAAGGAATCGACCCTGCACCTCGTTTTGAGG 882660 Query 27204 TTGCGGGGTGG 27214 ||||| ||||| Sbjct 882659 TTGCGCGGTGG 882649 >seq5 Length=1227376 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 || || || || || || |||| ||| ||||||| | ||||| || || || ||| Sbjct 829304 ATCACCCTCGAGGTCGAGTCGTCGGACACGATTGACAACGTCAAGGCCAAGATCCAGGAC 829363 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || || ||||| || || || || ||||| || || | ||||||||| || | || ||| Sbjct 829364 AAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGAC 829423 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 | || |||| || ||||| ||||| ||||||||||| | || ||||| | ||| Sbjct 829424 GGACGCACGCTTTCGGACTACAATATTCAGAAGGAGTCGACGCTGCACTTGGTGCTTCGT 829483 Query 27204 TTGCGGGGTGG 27214 | || ||||| Sbjct 829484 CTTCGCGGTGG 829494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918111866560