Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq6 109 1e-18
seq5 107 5e-18
seq8 87.8 4e-12
>seq6
Length=1203005
Score = 109 bits (120), Expect = 1e-18
Identities = 132/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558
|||| || ||||| || || ||||| ||||||| |||||||| | ||| || | ||
Sbjct 882661 CTCAAAACGAGGTGCAGGGTCGATTCCTTTTGGATGTTGTAATCCGACAAGGTGCGTCCG 882720
Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618
|| || ||||||||||| |||||||| | || || |||||||| || || || ||||||
Sbjct 882721 TCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTG 882780
Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678
|| |||||||| ||| || || || ||||| || | || || || | ||||||
Sbjct 882781 TCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGACGACTCAACCTCGAGGGTGATC 882840
>seq5
Length=1227376
Score = 107 bits (118), Expect = 5e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||| || |||||||| || || ||||| |||| |||||||| | | |||
Sbjct 829178 CGGAGACGCAGCACGAGGTGGAGCGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTA 829119
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || || || ||||||||||| |||||||| || || || |||||||| || || ||
Sbjct 829118 CGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCC 829059
Query 225613 TCCTTGTCTTGGATCTT 225629
|||||||| ||||||||
Sbjct 829058 TCCTTGTCCTGGATCTT 829042
Score = 86.0 bits (94), Expect = 1e-11
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||| || || || || || || | || || ||| | || | ||| ||
Sbjct 830642 AGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCC 830583
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| | || || ||||| |||||||| || ||||||||
Sbjct 830582 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCC 830523
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGA 225656
|||||||| ||| || ||||||||||| ||
Sbjct 830522 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGA 830488
>seq8
Length=1023559
Score = 87.8 bits (96), Expect = 4e-12
Identities = 122/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567
|||||||| || || || || | || ||||| ||| | | | | |||||| ||
Sbjct 348054 AGGTGGAGCGTCGACTCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAGT 348113
Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627
|||||||| |||||||| | || || ||||||||||| || || |||||||| ||| ||
Sbjct 348114 TGCTTCCCTGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTC 348173
Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678
|| ||| || | | ||| ||||| || | || || || | |||||||
Sbjct 348174 TTGACCTTGACGTCGTAGATTGTGTCCGACGACTCGACCTCGAGCGTGATC 348224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192530390196782
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |