Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq16 111 1e-19 >seq16 Length=742613 Score = 111 bits (122), Expect = 1e-19 Identities = 133/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 27123 CCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAG 27182 || ||||||||| ||||| ||||| || ||||| || ||||||||||| ||||| || || Sbjct 243069 CCGCTCGAGCTGCGTCTTGAGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCGAG 243128 Query 27183 GGTGTGGACAAACTCTCCCGGT-TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 27241 | ||| ||||| |||| || | |||||||| | || ||||||| ||| |||| Sbjct 243129 TTGGAGGATGAACTCATGCGGTATCGTG-TCGGTGACGAGGGCGATCATGTGCGTCAGGA 243187 Query 27242 GAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 27299 | | ||| ||||||||| ||||| || ||||| || | ||| | || | |||||| Sbjct 243188 GGGCGTACGAGGCGATGTTGAAGGGCACGCCGAGGCCGAGGTCGGCAGAGCGCTGGTA 243245 Score = 109 bits (120), Expect = 4e-19 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 27527 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 27586 ||||||| || ||||||| || ||| |||||| ||||| ||||| | | ||| | | Sbjct 243630 ACCCGTAGACGGGTCCCAAATCACCCACTTCCCGGTGCTGCAAGCCGCGCGAGTCGAGGA 243689 Query 27587 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGT 27646 | |||| | |||||| | ||||||||||| || |||||||| | | | | || |||| Sbjct 243690 ACTCTCGGCTGCCGTTGCCATCCCAGATCTTGACGCCCTTCTCCGCCAACACCTTCGAGT 243749 Query 27647 TTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 27705 ||| | ||||| ||| ||||||| ||||||||| | || | | | ||||||| | Sbjct 243750 CGGTGCATCCCTC-GACAAACCACAACAGCTCCTCGATGATGCCGCGCGAAAAGACGCGT 243808 Query 27706 TTGGTCGTGAGGAGGGG 27722 |||||||| | ||| || Sbjct 243809 TTGGTCGTCAAGAGCGG 243825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369506961321443