Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq5 150 4e-31
seq15 138 2e-27
seq6 116 8e-21
seq17 105 1e-17
seq8 96.9 7e-15
>seq5
Length=1227376
Score = 150 bits (166), Expect = 4e-31
Identities = 149/193 (77%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || ||||| |||| || | ||| || || || || |||||||| |
Sbjct 829495 ACCACCGCGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGAATATTGTAGTCCGA 829436
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||||||||| || ||||| || || || ||||| |||||||| || || |||||| |||
Sbjct 829435 AAGCGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGG 829376
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| || || ||| | || || |||||||| | |||||
Sbjct 829375 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGACGACTCGAC 829316
Query 283052 TTCGAGAGTGATC 283064
||||| ||||||
Sbjct 829315 CTCGAGGGTGATC 829303
Score = 138 bits (152), Expect = 2e-27
Identities = 144/189 (76%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| || || ||||| ||||| || | ||| || || || ||||| |||||
Sbjct 830657 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 830598
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|||||||| || ||||| || || || ||||| |||||||| || || |||||| ||||
Sbjct 830597 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 830538
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| |||||||| || || ||| | ||||| |||||||| | ||||||
Sbjct 830537 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACT 830478
Query 283053 TCGAGAGTG 283061
||| |||
Sbjct 830477 GTGAGCGTG 830469
Score = 91.5 bits (100), Expect = 3e-13
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| || || || || || || || || | ||| ||||| ||||||||||| || |
Sbjct 829185 ACCTCCGCGGAGACGCAGCACGAGGTGGAGCGTCGACTCTTTCTGGATGTTGTAATCCGA 829126
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || || || ||||| || || ||||| || ||||| | ||| || ||||| ||
Sbjct 829125 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGG 829066
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024
|| ||||||||||| |||||||| || || ||
Sbjct 829065 GATGCCCTCCTTGTCCTGGATCTTGGCCTTAAC 829033
>seq15
Length=767120
Score = 138 bits (152), Expect = 2e-27
Identities = 124/156 (79%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || || ||||||||||||| ||| |||||||| ||||| || || || |||||||||
Sbjct 225815 TCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 225874
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|| | || || |||||| || || ||||||||||| |||||||| || || ||| |
Sbjct 225875 ATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 225934
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064
||||| |||||||| | ||||| ||||| ||||||
Sbjct 225935 TCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 225970
>seq6
Length=1203005
Score = 116 bits (128), Expect = 8e-21
Identities = 122/158 (77%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966
||| |||||||||||||| || | |||| ||||| || ||||| || || ||||| || |
Sbjct 882684 TTCCTTTTGGATGTTGTAATCCGACAAG-GTGCGTCCGTCCTCAAGCTGCTTCCCCGCGA 882742
Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026
||||||| || || ||||| || || ||||||||||| |||||||| || || |||
Sbjct 882743 AGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGT 882802
Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064
| || || ||||| || | || || ||||| ||||||
Sbjct 882803 TGTCAATCGTGTCGGACGACTCAACCTCGAGGGTGATC 882840
Score = 93.3 bits (102), Expect = 9e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 282966 AAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACG 283025
|||||||| || || ||||| || || ||||||||||| || ||||| || || ||
Sbjct 883958 AAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACA 884017
Query 283026 GTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTA 283085
| ||||| ||||| || | || || ||||| ||||| ||||| || || | |||||
Sbjct 884018 TTGTCGATCGTGTCGGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTG 884077
Query 283086 ACGAATATCTGCAT 283099
||||| ||||||||
Sbjct 884078 ACGAAGATCTGCAT 884091
>seq17
Length=551157
Score = 105 bits (116), Expect = 1e-17
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || || || || || | || || || |||||||||||||| |
Sbjct 51376 ACCACCGCGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 51317
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| |||||||| ||||| || || || ||||| |||||||| || || ||||| ||
Sbjct 51316 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGG 51257
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024
|| ||||||||||| |||||||| || || ||
Sbjct 51256 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC 51224
>seq8
Length=1023559
Score = 96.9 bits (106), Expect = 7e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || | |||||||||||| | | | ||| ||| || ||||| ||||| || |||
Sbjct 348069 TCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAGTTGCTTCCCTGCGAAG 348128
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||| || || ||||| ||| || ||||||||||| ||| |||| | || |||
Sbjct 348129 ATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTCTTGACCTTGACGTCG 348188
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064
| ||| |||||||| | ||||| ||||| ||||||
Sbjct 348189 TAGATTGTGTCCGACGACTCGACCTCGAGCGTGATC 348224
Score = 89.7 bits (98), Expect = 1e-12
Identities = 131/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836
|| ||||| ||||| | ||| || || ||||||||| ||||| || | || ||| |||
Sbjct 36314 TTTGTGAAGATGTAACGGGCGCTGGCCGCGTCCTTGCCGCCTTGAAGACGCGTACCGAAC 36255
Query 273837 TGACCCT-CGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATT 273895
|| || | |||| | ||| ||| ||||||||||| |||||| | | ||| || |
Sbjct 36254 TGGCCGTTCGGGTCG-AGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCC 36196
Query 273896 CACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATA 273955
||||| || ||||| || || | ||||||||||| || || ||| || | ||| ||
Sbjct 36195 GACGATCGTGCCCTGGAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTA 36136
Query 273956 ACC 273958
||
Sbjct 36135 GCC 36133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738489198662
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |