Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6 140 8e-28 seq15 120 7e-22 seq5 105 2e-17 seq17 91.5 4e-13 >seq6 Length=1203005 Score = 140 bits (154), Expect = 8e-28 Identities = 141/181 (78%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015 ||||||||||||||| || || ||||| || || |||||||| ||||| ||||| Sbjct 882840 GATCACCCTCGAGGTTGAGTCGTCCGACACGATTGACAACGTCAAGGCCAAGATCCAGGA 882781 Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 ||| || || |||||||| |||||||| || | |||||||| || || ||||| || || Sbjct 882780 CAAGGAGGGCATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA 882721 Query 178076 TGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGA 178134 ||| | || |||| | ||||| ||| ||||||| ||||| || ||||| || ||||||| Sbjct 882720 CGGACGCAC-CTTGTCGGATTACAACATCCAAAAGGAATCGACCCTGCACCTCGTTTTGA 882662 Query 178135 G 178135 | Sbjct 882661 G 882661 Score = 102 bits (112), Expect = 2e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || || ||| Sbjct 884088 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCCGAC 884029 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| || || |||||||| |||||||| Sbjct 884028 ACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAG 883969 Query 178044 CGACTTATCTT 178054 || | ||||| Sbjct 883968 CGCTTGATCTT 883958 >seq15 Length=767120 Score = 120 bits (132), Expect = 7e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015 ||||||||||||||| || || ||||| ||||| |||||||| ||||| ||||| Sbjct 225970 GATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGA 225911 Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 ||| || || ||||| || |||||||| || || ||||| ||||| || |||||||| || Sbjct 225910 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 225851 Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || | |||||| | || || ||| | || || || || || || || || || Sbjct 225850 CGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCACCTCGT 225797 >seq5 Length=1227376 Score = 105 bits (116), Expect = 2e-17 Identities = 128/173 (74%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015 ||||||||||||||| || || ||||| || || |||||||| ||||| ||||| Sbjct 829303 GATCACCCTCGAGGTCGAGTCGTCGGACACGATTGACAACGTCAAGGCCAAGATCCAGGA 829362 Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 ||| || || || || || |||||||| || | ||||||||||| || ||||| || || Sbjct 829363 CAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGA 829422 Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 ||| | || ||| | || || || | || || || || || ||||| |||| Sbjct 829423 CGGACGCACGCTTTCGGACTACAATATTCAGAAGGAGTCGACGCTGCA-CTTG 829474 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 || ||||||||||| |||||||| ||||| |||||||| || || || || || ||| Sbjct 830488 TCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGAC 830547 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 ||||| || | ||||||||||| || ||||| || || || | || || ||| ||| Sbjct 830548 CAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGACGGGCGCACGCTCAGCGACTAT 830607 Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||| | || || || || || ||||| || || Sbjct 830608 AACATTCAGAAGGAGTCGACGCTGCACCTGGT 830639 >seq17 Length=551157 Score = 91.5 bits (100), Expect = 4e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| || |||||||| || | ||||||||||| || Sbjct 51233 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCGCCGGCAAG 51292 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | |||||| | || || ||| |||| || || || || || || Sbjct 51293 CAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 51352 Query 178125 CTTGT 178129 || || Sbjct 51353 CTCGT 51357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730382591282