Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq5 147 2e-30
seq17 118 1e-21
seq15 109 5e-19
seq14 87.8 2e-12
seq4 86.0 6e-12
>seq5
Length=1227376
Score = 147 bits (162), Expect = 2e-30
Identities = 119/144 (83%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | |||||| |||||||| ||||||||||||||||||||||
Sbjct 830658 GCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCT 830599
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| |||||| |||| || ||||||||||||||||| |||| |||||| ||||| | ||
Sbjct 830598 GAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGG 830539
Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778
|| || |||||||||| ||| ||
Sbjct 830538 AATGCCCTCCTTGTCCTGGATCTT 830515
Score = 127 bits (140), Expect = 2e-24
Identities = 114/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | ||||| |||||||| |||||||||||| || ||||| ||
Sbjct 829494 CCACCGCGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGAATATTGTAGTCCGAA 829435
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| || ||||||||||||||||| |||| |||||| ||||| | |||
Sbjct 829434 AGCGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 829375
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| || |||||||||| ||| ||
Sbjct 829374 ATGCCCTCCTTGTCCTGGATCTT 829352
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | ||| || || ||||| ||| ||||| ||||| || || ||
Sbjct 829184 CCTCCGCGGAGACGCAGCACGAGGTGGAGCGTCGACTCTTTCTGGATGTTGTAATCCGAA 829125
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| ||||||||||| || ||||| || || ||||| ||||| | ||
Sbjct 829124 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 829065
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| || |||||||||| ||| ||
Sbjct 829064 ATGCCCTCCTTGTCCTGGATCTT 829042
>seq17
Length=551157
Score = 118 bits (130), Expect = 1e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | || || || || || ||||||||| ||||| ||||| ||
Sbjct 51375 CCACCGCGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 51316
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| |||||||||||||||||||| |||| |||||| ||||| | |||
Sbjct 51315 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 51256
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| || |||||||||| ||| ||
Sbjct 51255 ATGCCCTCCTTGTCCTGGATCTT 51233
>seq15
Length=767120
Score = 109 bits (120), Expect = 5e-19
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||||||||| ||||| || || ||||| |||| ||||||||||||||||| ||
Sbjct 225814 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 225873
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778
|| |||||||| ||||| | ||| | || |||||||||| ||| ||
Sbjct 225874 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 225921
>seq14
Length=771899
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 41631 CACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGT 41690
|||| |||||||| || || | || ||| ||||||||| || | | | || |
Sbjct 4816 CACCCCCGCCGCGCAGGCGCAGCAGCAGGTGCAGCGTGGCATCACGCGCGACGCAGTACT 4757
Query 41691 CGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750
||| ||||||||| |||| || |||||||||||| |||| | |||||||| ||||| |
Sbjct 4756 CGGCGAGGGTGCGGGCGTCCTCCAGCTGCTTGCCGCCGAACAAGAGGCGCTGCTGGTCAG 4697
Query 41751 CGGGAACGCTCTCCTTGTCCATGATT 41776
|| | || |||||||||| ||||
Sbjct 4696 GCGGGATGCCCTCCTTGTCCTGGATT 4671
>seq4
Length=1271110
Score = 86.0 bits (94), Expect = 6e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| || ||||| ||||||| || | || | | ||| ||||| ||||| ||
Sbjct 79306 GCCGCCCCGCAGACGGAACACCATCTGGATGGTAGTGTTGCGCTGGATGTTGTAGTCCGA 79365
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| || || | || ||||||||||||| |||| ||||||||||| ||||| || ||
Sbjct 79366 GAGCGTACGTCCATCTTCGAGCTGCTTGCGCTCGAAGATCAGGCGCTGCTGGTCGGCCGG 79425
Query 41755 AACGCTCTCCTTGTC 41769
|| || | ||||||
Sbjct 79426 AATGCCCAGCTTGTC 79440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303693723600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |