Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq23 122 1e-22
seq4 87.8 2e-12
>seq23
Length=148841
Score = 122 bits (134), Expect = 1e-22
Identities = 363/555 (65%), Gaps = 14/555 (3%)
Strand=Plus/Plus
Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069
||| || |||| | || || || | ||| ||||| || |||||||| || || | ||
Sbjct 121509 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGCAAAGAA 121568
Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129
| || | | | ||||| || || ||||| || ||||||||| | |
Sbjct 121569 CAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 121628
Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189
||| || | |||||||| || | ||| |||| | | ||||| || ||||| |||||
Sbjct 121629 AATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTTGCCTCC 121688
Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249
||| || | ||| | || ||||| || || || | | ||| || || || || || ||
Sbjct 121689 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 121748
Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 54309
|| || || |||| ||| || || | || || ||||| || || |||||
Sbjct 121749 GTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATTGTGGATCGAGAGACC 121808
Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCT 54368
|| || ||||| | || ||||| | || || ||| || | ||| || ||||||||||
Sbjct 121809 GATGCCGCCTGCAGTCTTGGAGATGAGCGCACA-CGTCTTGAGCGTGTCGTAGATGCCCT 121867
Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAA--ACAGCTAGACATTTGGTGACGACTAGT 54426
| || || ||| |||| ||| || || || | ||| | || || | ||
Sbjct 121868 CGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--GT 121925
Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486
|| || || || | || || || ||||||||||| | || || | ||||||||
Sbjct 121926 GCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGATTGTA 121985
Query 54487 CGTCTCGATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTA 54542
||||||||| || ||| || || || | |||| || || ||||| ||||| |
Sbjct 121986 CGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATGA 122041
Query 54543 ACATGTGCTGAGGTC 54557
||||||||| ||||
Sbjct 122042 GCATGTGCTGCGGTC 122056
>seq4
Length=1405664
Score = 87.8 bits (96), Expect = 2e-12
Identities = 117/162 (72%), Gaps = 3/162 (2%)
Strand=Plus/Plus
Query 24182 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 24241
||| || |||||||||||||| | ||| ||||| || ||||| || |||||||| |||||
Sbjct 862394 GGAGAAAGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAATGA 862453
Query 24242 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC 24301
|| || ||||| || || || || || ||||| || | || | || || | |||
Sbjct 862454 GCCGGAGAAGAAGATGCCCTCGACGGCGGCAAACGCGACCAGGCGCTCGCCGAAGACGGA 862513
Query 24302 GCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTT 24340
|| ||| | ||||| | | ||||| |||||||||||
Sbjct 862514 GCGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 862555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593721317982240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |