Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq23 122 1e-22 seq4 87.8 2e-12 >seq23 Length=148841 Score = 122 bits (134), Expect = 1e-22 Identities = 363/555 (65%), Gaps = 14/555 (3%) Strand=Plus/Plus Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| || |||| | || || || | ||| ||||| || |||||||| || || | || Sbjct 121509 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGCAAAGAA 121568 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 | || | | | ||||| || || ||||| || ||||||||| | | Sbjct 121569 CAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 121628 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 ||| || | |||||||| || | ||| |||| | | ||||| || ||||| ||||| Sbjct 121629 AATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTTGCCTCC 121688 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 ||| || | ||| | || ||||| || || || | | ||| || || || || || || Sbjct 121689 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 121748 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 54309 || || || |||| ||| || || | || || ||||| || || ||||| Sbjct 121749 GTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATTGTGGATCGAGAGACC 121808 Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCT 54368 || || ||||| | || ||||| | || || ||| || | ||| || |||||||||| Sbjct 121809 GATGCCGCCTGCAGTCTTGGAGATGAGCGCACA-CGTCTTGAGCGTGTCGTAGATGCCCT 121867 Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAA--ACAGCTAGACATTTGGTGACGACTAGT 54426 | || || ||| |||| ||| || || || | ||| | || || | || Sbjct 121868 CGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--GT 121925 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 || || || || | || || || ||||||||||| | || || | |||||||| Sbjct 121926 GCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGATTGTA 121985 Query 54487 CGTCTCGATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTA 54542 ||||||||| || ||| || || || | |||| || || ||||| ||||| | Sbjct 121986 CGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATGA 122041 Query 54543 ACATGTGCTGAGGTC 54557 ||||||||| |||| Sbjct 122042 GCATGTGCTGCGGTC 122056 >seq4 Length=1405664 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/162 (72%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 24182 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 24241 ||| || |||||||||||||| | ||| ||||| || ||||| || |||||||| ||||| Sbjct 862394 GGAGAAAGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAATGA 862453 Query 24242 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC 24301 || || ||||| || || || || || ||||| || | || | || || | ||| Sbjct 862454 GCCGGAGAAGAAGATGCCCTCGACGGCGGCAAACGCGACCAGGCGCTCGCCGAAGACGGA 862513 Query 24302 GCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTT 24340 || ||| | ||||| | | ||||| ||||||||||| Sbjct 862514 GCGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 862555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721317982240