Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq26 116 4e-21 seq25 116 4e-21 >seq26 Length=12709 Score = 116 bits (128), Expect = 4e-21 Identities = 139/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 145672 AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGG 145731 ||||| ||| || ||||| ||||||| |||||||||||||||||| || || | || Sbjct 11700 AGCTGCGTCTTGAGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCAAGCTGGAGG 11759 Query 145732 ATGAAGTCCC-CGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTA 145790 ||||| || ||| ||| | | |||| | | |||| ||||| ||||| |||| ||| Sbjct 11760 ATGAATTCGTGCGGAATCGTGTCG-GTGACGAGAGCGATCATGTGCGTCAGGAGGGCGTA 11818 Query 145791 GCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCA 145850 ||| ||||||||||| || || || || | ||| | ||||||||||||| |||| Sbjct 11819 CGAGGCGATGTTGAAGGGTACGCCGAGGCCGAGGTCGGCAGAGCGCTGGTACATGAGGCA 11878 Query 145851 GGAGAG 145856 |||||| Sbjct 11879 GGAGAG 11884 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 146123 CGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCAT 146182 ||||||| || ||| |||||| |||||||||||||||| ||| || | | | | | | Sbjct 12308 CGAGGAACTCTCGGCTGCCGTTGCCGTCCCAGATCTTGACCCCCTTCTCCGCCAACACTT 12367 Query 146183 TGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGA 146242 | || || ||| | ||| || ||||| | |||||| |||| || || | | |||||| Sbjct 12368 TCGAATCGGTGCAGCCCTCGACAAACCACAACAGCTCCTCGATGATGCCGCGCGAGAAGA 12427 Query 146243 CCCTCTTGGTGGTCAGCAGGGGGA 146266 | | |||||| ||||| || |||| Sbjct 12428 CGCGCTTGGTCGTCAGAAGAGGGA 12451 >seq25 Length=12709 Score = 116 bits (128), Expect = 4e-21 Identities = 139/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 145672 AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGG 145731 ||||| ||| || ||||| ||||||| |||||||||||||||||| || || | || Sbjct 11700 AGCTGCGTCTTGAGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCAAGCTGGAGG 11759 Query 145732 ATGAAGTCCC-CGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTA 145790 ||||| || ||| ||| | | |||| | | |||| ||||| ||||| |||| ||| Sbjct 11760 ATGAATTCGTGCGGAATCGTGTCG-GTGACGAGAGCGATCATGTGCGTCAGGAGGGCGTA 11818 Query 145791 GCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCA 145850 ||| ||||||||||| || || || || | ||| | ||||||||||||| |||| Sbjct 11819 CGAGGCGATGTTGAAGGGTACGCCGAGGCCGAGGTCGGCAGAGCGCTGGTACATGAGGCA 11878 Query 145851 GGAGAG 145856 |||||| Sbjct 11879 GGAGAG 11884 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 146123 CGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCAT 146182 ||||||| || ||| |||||| |||||||||||||||| ||| || | | | | | | Sbjct 12308 CGAGGAACTCTCGGCTGCCGTTGCCGTCCCAGATCTTGACCCCCTTCTCCGCCAACACTT 12367 Query 146183 TGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGA 146242 | || || ||| | ||| || ||||| | |||||| |||| || || | | |||||| Sbjct 12368 TCGAATCGGTGCAGCCCTCGACAAACCACAACAGCTCCTCGATGATGCCGCGCGAGAAGA 12427 Query 146243 CCCTCTTGGTGGTCAGCAGGGGGA 146266 | | |||||| ||||| || |||| Sbjct 12428 CGCGCTTGGTCGTCAGAAGAGGGA 12451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076519713520