Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq15 154 2e-32 seq4 140 3e-28 seq6 132 5e-26 seq20 113 5e-20 seq9 100 3e-16 >seq15 Length=541629 Score = 154 bits (170), Expect = 2e-32 Identities = 141/178 (79%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCAT 116748 |||| | || |||||| | | |||||||| || ||| ||||||||||| || ||||| Sbjct 263749 GGACATCTCGAAGGACCTGTGGGACTGGGACCGACTGACGGACAACGAGCGACACTTCAT 263690 Query 116749 CAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA 116808 | |||||| || ||||| |||||||| |||||||||||||||||||| ||||| || Sbjct 263689 CTCGCACGTCCTCGCCTTCTTCGCCGCTTCGGACGGCATCGTCAACGAGAACCTGGTGGA 263630 Query 116809 GCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 | | ||| | |||||||||| | ||||||||||| || |||||||| || |||||| Sbjct 263629 GAGGTTCTCGGCGGAGGTGCAGATCGCCGAGGCGCGCTGTTTCTACGGTTTCCAGATC 263572 Score = 116 bits (128), Expect = 4e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||||||||| ||||| | | | |||| ||| | || || | Sbjct 263337 AGAAGGCCGACTGGGCGCTGCGGTGGATTTCGGACCCTCGCGCCGTCTTTGCGGAACGAC 263278 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| || ||||| || ||||||||| ||||||| || ||| |||||| | || || | Sbjct 263277 TGGTTGCTTTCGCTGCTGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCGATTTTCT 263218 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTT 117138 |||||||||| |||||| | ||||||||| |||| || Sbjct 263217 GGCTCAAGAAGCGCGGCTTGATGCCCGGCTTGACGTT 263181 >seq4 Length=1405664 Score = 140 bits (154), Expect = 3e-28 Identities = 128/159 (81%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGC 117040 ||||||||||||||||||| ||||||| | | | || | ||| ||||||||||||| Sbjct 862554 AGAAGGCCGAGTGGGCGCTCACCTGGATCTCGGAC-GACCGCTCCGTCTTCGGCGAGCGC 862496 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 ||||| || || || |||||||||||| ||||||| || ||| ||||| |||| || Sbjct 862495 CTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCATTCGCGTCCATCTTC 862436 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 ||||||||||| |||||| | |||||||| || |||||| Sbjct 862435 TGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACTTTC 862397 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| ||||| ||||| | |||||||| || | |||| || Sbjct 913802 TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCG 913861 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 ||||||| ||||| || |||| ||||| |||| |||||||||||||||||| ||| | | Sbjct 913862 CGGGCAAGCAGCTCGAGGACGGTCGCACGCTCAGCGACTACAACATCCAGAAAGAGTCGA 913921 Query 40886 CGCTGCATCTAGTGTTGCG 40904 | || || || ||| |||| Sbjct 913922 CCCTCCACCTCGTGCTGCG 913940 Score = 107 bits (118), Expect = 2e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || |||| ||||| ||||||||||| | |||||||| || | |||| || Sbjct 914241 TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGCTTGATCTTCG 914300 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| ||||| || |||| ||||| || | ||| |||||||||||||| ||| | | Sbjct 914301 CCGGCAAGCAGCTTGAGGACGGACGCACGCTTAGCGATTACAACATCCAGAAAGAGTCGA 914360 Query 40886 CGCTGCATCTAGTGTTGCG 40904 | || || || ||| |||| Sbjct 914361 CCCTCCACCTCGTGCTGCG 914379 Score = 105 bits (116), Expect = 7e-18 Identities = 202/295 (68%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202 |||||||||||||| | ||||||||||| || |||||||||||| | || ||| | Sbjct 862295 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 862236 Query 117203 CATTTGGTGCAGCGACCG-AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261 || | | || || || | | || | | ||| | ||| | ||| ||||||| Sbjct 862235 CACCTCGAGCGCCGCCCTCACCCCGACACA-GTCGAGCGCATCATTCGCGAGGCGGTCGA 862177 Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321 ||||||||| ||||||||||| |||||||| || || | || | || |||| Sbjct 862176 GATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTCATCGGCATGAACAGCGA 862117 Query 117322 AACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGC 117381 |||| || |||||||||||||| |||||| | ||||| | | ||| | | || Sbjct 862116 CCTCATGTGCCAGTACATCGAGTTCGTTGCCGACCGCTTGCTGGTTGCGCTCGGCAACGA 862057 Query 117382 CAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436 ||| |||| ||| | |||||| | || |||||| | | ||||| ||||| Sbjct 862056 GAAGATCTACCACAAGGAGAACCCGTTCGATTTTATGGAGATGATCTCGATGGAG 862002 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 40768 AAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCG 40827 |||| || |||| ||||| |||||||| || | |||||||| || ||||||| |||| Sbjct 913487 AAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGTCTCATCTTCGCG 913546 Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACG 40887 || || ||||| || |||| || || || || |||||||||||||| ||| | || Sbjct 913547 GGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 913606 Query 40888 CTGCATCTAGTGTTGCG 40904 || || || ||| |||| Sbjct 913607 CTCCACCTCGTGCTGCG 913623 >seq6 Length=1276814 Score = 132 bits (146), Expect = 5e-26 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784 |||||| |||| ||||| | | |||| | | | |||| |||||| || || | || Sbjct 941531 ATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACG-TCAAGGCCAAGATCCAGGA 941473 Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| ||||| ||||| | |||||||| || | |||| ||||||||| ||||| || || Sbjct 941472 CAAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGA 941413 Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| || | |||||||||||||||||||||| | ||||| ||||| |||||| | Sbjct 941412 CGGTCGCACGCTTAGCGACTACAACATCCAGAAGGAGTCTACGCTCCATCTGGTGTTGAG 941353 Query 40905 CTTGAGGGGCGG 40916 ||| | || || Sbjct 941352 GTTGCGCGGAGG 941341 Score = 111 bits (122), Expect = 2e-19 Identities = 121/158 (77%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | || Sbjct 942304 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 942245 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || |||| ||||| |||||||| || | ||||| Sbjct 942244 GACACGATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCA 942186 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG 40846 |||||| | |||| ||||||||| ||||| || |||| Sbjct 942185 GCAACGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACG 942148 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | |||||||| || ||| | | || ||||| ||||| || Sbjct 578131 GACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTCTTGTTCGGCGGCAAGCAGCTCGAG 578072 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||| | |||| |||| |||| ||| | || || || ||||||||||| | || || Sbjct 578071 GACAACCGCAACCTCTACGAGTACGGCGTCGAGCGTGACGCCACGCTGCACTTGCTGCTG 578012 Query 40903 CGCTTGAGGGGCGGCGGC 40920 ||| || | ||||| ||| Sbjct 578011 CGCCTGCGCGGCGGGGGC 577994 >seq20 Length=382848 Score = 113 bits (124), Expect = 5e-20 Identities = 131/174 (75%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784 |||||| |||| ||||| | | |||| | | |||| |||||| || || | || Sbjct 80775 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 80833 Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| |||||||||||| | |||||||| || ||||||| || ||||| ||||| || || Sbjct 80834 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 80893 Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| || |||||||||||||||||| | || || || || || Sbjct 80894 CGGCCGCACCCTCTCGGATTACAACATCCAGAAGGAGTCGACCCTCCACCTCGT 80947 >seq9 Length=1185843 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| |||||||||||| | |||||||| || | |||| || Sbjct 462401 TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCG 462342 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| ||||| || |||| ||||| || ||||||||||||||||||||| | | Sbjct 462341 CCGGCAAGCAGCTCGAGGACGGTCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGA 462282 Query 40886 CGCTGCATCTAGT 40898 | || || || || Sbjct 462281 CCCTCCACCTCGT 462269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218955270880