Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq15 154 2e-32
seq4 140 3e-28
seq6 132 5e-26
seq20 113 5e-20
seq9 100 3e-16
>seq15
Length=541629
Score = 154 bits (170), Expect = 2e-32
Identities = 141/178 (79%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCAT 116748
|||| | || |||||| | | |||||||| || ||| ||||||||||| || |||||
Sbjct 263749 GGACATCTCGAAGGACCTGTGGGACTGGGACCGACTGACGGACAACGAGCGACACTTCAT 263690
Query 116749 CAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA 116808
| |||||| || ||||| |||||||| |||||||||||||||||||| ||||| ||
Sbjct 263689 CTCGCACGTCCTCGCCTTCTTCGCCGCTTCGGACGGCATCGTCAACGAGAACCTGGTGGA 263630
Query 116809 GCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866
| | ||| | |||||||||| | ||||||||||| || |||||||| || ||||||
Sbjct 263629 GAGGTTCTCGGCGGAGGTGCAGATCGCCGAGGCGCGCTGTTTCTACGGTTTCCAGATC 263572
Score = 116 bits (128), Expect = 4e-21
Identities = 120/157 (76%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
|||||||||| ||||||||||| ||||| | | | |||| ||| | || || |
Sbjct 263337 AGAAGGCCGACTGGGCGCTGCGGTGGATTTCGGACCCTCGCGCCGTCTTTGCGGAACGAC 263278
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
|||| || ||||| || ||||||||| ||||||| || ||| |||||| | || || |
Sbjct 263277 TGGTTGCTTTCGCTGCTGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCGATTTTCT 263218
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTT 117138
|||||||||| |||||| | ||||||||| |||| ||
Sbjct 263217 GGCTCAAGAAGCGCGGCTTGATGCCCGGCTTGACGTT 263181
>seq4
Length=1405664
Score = 140 bits (154), Expect = 3e-28
Identities = 128/159 (81%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGC 117040
||||||||||||||||||| ||||||| | | | || | ||| |||||||||||||
Sbjct 862554 AGAAGGCCGAGTGGGCGCTCACCTGGATCTCGGAC-GACCGCTCCGTCTTCGGCGAGCGC 862496
Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100
||||| || || || |||||||||||| ||||||| || ||| ||||| |||| ||
Sbjct 862495 CTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCATTCGCGTCCATCTTC 862436
Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139
||||||||||| |||||| | |||||||| || ||||||
Sbjct 862435 TGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACTTTC 862397
Score = 111 bits (122), Expect = 2e-19
Identities = 108/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || || | ||||| ||||| ||||| | |||||||| || | |||| ||
Sbjct 913802 TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCG 913861
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
||||||| ||||| || |||| ||||| |||| |||||||||||||||||| ||| | |
Sbjct 913862 CGGGCAAGCAGCTCGAGGACGGTCGCACGCTCAGCGACTACAACATCCAGAAAGAGTCGA 913921
Query 40886 CGCTGCATCTAGTGTTGCG 40904
| || || || ||| ||||
Sbjct 913922 CCCTCCACCTCGTGCTGCG 913940
Score = 107 bits (118), Expect = 2e-18
Identities = 107/139 (77%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || |||| ||||| ||||||||||| | |||||||| || | |||| ||
Sbjct 914241 TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGCTTGATCTTCG 914300
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
| ||||| ||||| || |||| ||||| || | ||| |||||||||||||| ||| | |
Sbjct 914301 CCGGCAAGCAGCTTGAGGACGGACGCACGCTTAGCGATTACAACATCCAGAAAGAGTCGA 914360
Query 40886 CGCTGCATCTAGTGTTGCG 40904
| || || || ||| ||||
Sbjct 914361 CCCTCCACCTCGTGCTGCG 914379
Score = 105 bits (116), Expect = 7e-18
Identities = 202/295 (68%), Gaps = 2/295 (1%)
Strand=Plus/Minus
Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202
|||||||||||||| | ||||||||||| || |||||||||||| | || ||| |
Sbjct 862295 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 862236
Query 117203 CATTTGGTGCAGCGACCG-AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261
|| | | || || || | | || | | ||| | ||| | ||| |||||||
Sbjct 862235 CACCTCGAGCGCCGCCCTCACCCCGACACA-GTCGAGCGCATCATTCGCGAGGCGGTCGA 862177
Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321
||||||||| ||||||||||| |||||||| || || | || | || ||||
Sbjct 862176 GATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTCATCGGCATGAACAGCGA 862117
Query 117322 AACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGC 117381
|||| || |||||||||||||| |||||| | ||||| | | ||| | | ||
Sbjct 862116 CCTCATGTGCCAGTACATCGAGTTCGTTGCCGACCGCTTGCTGGTTGCGCTCGGCAACGA 862057
Query 117382 CAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436
||| |||| ||| | |||||| | || |||||| | | ||||| |||||
Sbjct 862056 GAAGATCTACCACAAGGAGAACCCGTTCGATTTTATGGAGATGATCTCGATGGAG 862002
Score = 95.1 bits (104), Expect = 1e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 40768 AAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCG 40827
|||| || |||| ||||| |||||||| || | |||||||| || ||||||| ||||
Sbjct 913487 AAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGTCTCATCTTCGCG 913546
Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACG 40887
|| || ||||| || |||| || || || || |||||||||||||| ||| | ||
Sbjct 913547 GGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 913606
Query 40888 CTGCATCTAGTGTTGCG 40904
|| || || ||| ||||
Sbjct 913607 CTCCACCTCGTGCTGCG 913623
>seq6
Length=1276814
Score = 132 bits (146), Expect = 5e-26
Identities = 146/192 (76%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784
|||||| |||| ||||| | | |||| | | | |||| |||||| || || | ||
Sbjct 941531 ATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACG-TCAAGGCCAAGATCCAGGA 941473
Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844
||| ||||| ||||| | |||||||| || | |||| ||||||||| ||||| || ||
Sbjct 941472 CAAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGA 941413
Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|| ||||| || | |||||||||||||||||||||| | ||||| ||||| |||||| |
Sbjct 941412 CGGTCGCACGCTTAGCGACTACAACATCCAGAAGGAGTCTACGCTCCATCTGGTGTTGAG 941353
Query 40905 CTTGAGGGGCGG 40916
||| | || ||
Sbjct 941352 GTTGCGCGGAGG 941341
Score = 111 bits (122), Expect = 2e-19
Identities = 121/158 (77%), Gaps = 2/158 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | ||
Sbjct 942304 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 942245
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| |||||| || |||| ||||| |||||||| || | |||||
Sbjct 942244 GACACGATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCA 942186
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG 40846
|||||| | |||| ||||||||| ||||| || ||||
Sbjct 942185 GCAACGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACG 942148
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||||||||| | |||||||| || ||| | | || ||||| ||||| ||
Sbjct 578131 GACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTCTTGTTCGGCGGCAAGCAGCTCGAG 578072
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
||| | |||| |||| |||| ||| | || || || ||||||||||| | || ||
Sbjct 578071 GACAACCGCAACCTCTACGAGTACGGCGTCGAGCGTGACGCCACGCTGCACTTGCTGCTG 578012
Query 40903 CGCTTGAGGGGCGGCGGC 40920
||| || | ||||| |||
Sbjct 578011 CGCCTGCGCGGCGGGGGC 577994
>seq20
Length=382848
Score = 113 bits (124), Expect = 5e-20
Identities = 131/174 (75%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784
|||||| |||| ||||| | | |||| | | |||| |||||| || || | ||
Sbjct 80775 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 80833
Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844
||| |||||||||||| | |||||||| || ||||||| || ||||| ||||| || ||
Sbjct 80834 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 80893
Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| ||||||||| || |||||||||||||||||| | || || || || ||
Sbjct 80894 CGGCCGCACCCTCTCGGATTACAACATCCAGAAGGAGTCGACCCTCCACCTCGT 80947
>seq9
Length=1185843
Score = 100 bits (110), Expect = 3e-16
Identities = 102/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || || | ||||| |||||||||||| | |||||||| || | |||| ||
Sbjct 462401 TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCG 462342
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
| ||||| ||||| || |||| ||||| || ||||||||||||||||||||| | |
Sbjct 462341 CCGGCAAGCAGCTCGAGGACGGTCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGA 462282
Query 40886 CGCTGCATCTAGT 40898
| || || || ||
Sbjct 462281 CCCTCCACCTCGT 462269
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218955270880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |