Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq23 159 7e-34 seq2 104 5e-17 seq4 84.2 5e-11 >seq23 Length=148841 Score = 159 bits (176), Expect = 7e-34 Identities = 421/640 (66%), Gaps = 16/640 (3%) Strand=Plus/Minus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||| ||||| ||| ||||| || ||| | || |||||| | | || ||| Sbjct 122111 TTCAAGACGCTCGAGCGGTCGTACCTACTCCGCCTCGACGGCAAGGTGGCCGAGCGACCG 122052 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | ||||| || || ||||| || ||| || ||||| || ||| || Sbjct 122051 CAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGACCGCGCCATC 121992 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 |||||||||| ||| || || | | || || || | ||||||||||||||| Sbjct 121991 GAGACGTACAATCTCATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAAC 121932 Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072 ||||| || || ||||| |||||||| || || | ||| | |||||||| Sbjct 121931 GCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTTACGATGAAGGACGACTCG 121872 Query 249073 GTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGC 249129 |||| ||||| || |||||||| | ||||| ||| || || || || ||| Sbjct 121871 ATCGAGGGCATCTACGACACGCTCA---AGACGTGTGCGCTCATCTCCAAGACTGCAGGC 121815 Query 249130 GGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAAT 249189 || ||||||||||| || ||| ||||| |||| || ||||||||| || || || Sbjct 121814 GGCATCGGTCTCTCGATCCACAATATCCGCGCGACCGGCTCGTACATCGCCGGCACGAAC 121755 Query 249190 GGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATC 249249 || | | || ||| | ||| | || || | | ||| || | | | || Sbjct 121754 GGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTC 121695 Query 249250 AACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCAC 249303 |||||| || ||||| || |||||||||| || | || ||||||| Sbjct 121694 GACCAGGGAGGCAACAAGCGCC---CTGGCGCGTTCGCCATCTACCTCGAGCCGTGGCAC 121638 Query 249304 GCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCG 249363 ||||| || || |||||||| ||| | |||||| ||||||| ||| | | ||| Sbjct 121637 GCCGACATTTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCG 121578 Query 249364 CGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGAC 249423 || ||| | |||| | |||||| | ||||| | |||||| || ||| || || Sbjct 121577 CGCGACTTGTTCTTTGCGCTGTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAGAAC 121518 Query 249424 GGCGATTGGACGCTTCTTTCTCCGTCCGACGC-CCCGGAC 249462 ||||| ||| | || | | || |||| || ||||||| Sbjct 121517 GGCGACTGGCCCCTCTTCTGCCCTGCCGAGGCGCCCGGAC 121478 >seq2 Length=1546248 Score = 104 bits (114), Expect = 5e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 254205 CCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCC 254264 |||||||||||| || | ||||| |||||||| ||| | ||||| |||||||||||| Sbjct 815062 CCGCCTTTCAAGATCATCATCCTCGACGAGGCAGACTCGATGACCCAAGACGCGCAGTCC 815121 Query 254265 GCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAAC 254324 ||||||||||||| ||||||| ||||| | || || || ||| || | |||||| Sbjct 815122 GCCCTCCGCCGAATCATGGAGAACCACTCGAAGATCACCCGGTTCTGCTTGATCTGCAAC 815181 Query 254325 TACGT 254329 ||||| Sbjct 815182 TACGT 815186 >seq4 Length=1405664 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 115399 AATATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATG 115458 || |||||||| | ||||||||||| |||||||| ||| | || | |||||| | | Sbjct 700808 AAAATCGCACACCGACTCTGAATCGGCTCGATGATCTTGTTCGACTGGTTGCACGCCAGC 700867 Query 115459 ATGAACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCA 115518 ||||||||||||| | ||| | ||||| | || ||||| || || || || Sbjct 700868 GCGAACCGCGTCGTGTTGCTGTAGAGCTCCATCGTGCGGCGCAGGGCTTGTTGTGCGCCC 700927 Query 115519 GGTGTCATCGAGTCTGCCTCGTCGAG 115544 | ||||||||||| || |||||||| Sbjct 700928 GTGGTCATCGAGTCGGCTTCGTCGAG 700953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765877209984