Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq4 91.5 1e-13 seq9 86.0 5e-12 >seq6 Length=1276814 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || | ||| || || |||| || ||||| ||||||||| |||||||||||| | Sbjct 941341 CCTCCGCGCAACCTCAACACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTA 941400 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| |||| || || || || || ||||| ||||| ||||| ||||||||||| Sbjct 941401 AGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 941460 Query 45230 ACACCCTCCTTGTCC 45244 | |||||||||||| Sbjct 941461 ATTCCCTCCTTGTCC 941475 >seq4 Length=1405664 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||| ||||| |||||||||||| | || |||| |||| || || || || || ||||| Sbjct 913917 CTCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAA 913858 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| ||||| ||||||||||| | |||||||||||| Sbjct 913857 GATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCC 913818 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||| ||||| |||||||| ||| | || ||| |||| || || || || |||||||| Sbjct 914356 CTCTTTCTGGATGTTGTAATCGCTAAGCGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAA 914297 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| ||||| ||||||||||| | |||||||||||| ||| || Sbjct 914296 GATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTT 914249 >seq9 Length=1185843 Score = 86.0 bits (94), Expect = 5e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || |||| |||| || || || || |||||||| Sbjct 462286 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAA 462345 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| ||||| |||||||| || | |||||||||||| Sbjct 462346 GATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 462385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075017030798