Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq6 104 2e-17
seq4 91.5 1e-13
seq9 86.0 5e-12
>seq6
Length=1276814
Score = 104 bits (114), Expect = 2e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| || | ||| || || |||| || ||||| ||||||||| |||||||||||| |
Sbjct 941341 CCTCCGCGCAACCTCAACACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTA 941400
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| |||| |||| || || || || || ||||| ||||| ||||| |||||||||||
Sbjct 941401 AGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 941460
Query 45230 ACACCCTCCTTGTCC 45244
| ||||||||||||
Sbjct 941461 ATTCCCTCCTTGTCC 941475
>seq4
Length=1405664
Score = 91.5 bits (100), Expect = 1e-13
Identities = 80/100 (80%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||| ||||| |||||||||||| | || |||| |||| || || || || || |||||
Sbjct 913917 CTCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAA 913858
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
||||| ||||| ||||||||||| | ||||||||||||
Sbjct 913857 GATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCC 913818
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||| ||||| |||||||| ||| | || ||| |||| || || || || ||||||||
Sbjct 914356 CTCTTTCTGGATGTTGTAATCGCTAAGCGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAA 914297
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
||||| ||||| ||||||||||| | |||||||||||| ||| ||
Sbjct 914296 GATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTT 914249
>seq9
Length=1185843
Score = 86.0 bits (94), Expect = 5e-12
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| ||||||||||| || |||| |||| || || || || ||||||||
Sbjct 462286 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAA 462345
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
||||| ||||| |||||||| || | ||||||||||||
Sbjct 462346 GATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 462385
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395075017030798
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |