Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq23 293 2e-74
seq6 95.1 1e-14
seq4 86.0 6e-12
>seq23
Length=148841
Score = 293 bits (324), Expect = 2e-74
Identities = 510/740 (69%), Gaps = 4/740 (1%)
Strand=Plus/Plus
Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203
||||||||||||||| | || |||||||||||||||| | ||||| || || |||
Sbjct 121327 TCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTACCAG 121386
Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAAC 23263
| |||| ||| | || ||| | | || || | ||||||||| | | | | |
Sbjct 121387 AGCTTCTGTGCGGGCACGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAAGAGC 121446
Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATT--GCATCGGACACATGA 23321
| | || ||| ||||||| ||| || ||||||| | ||| || || | ||
Sbjct 121447 TCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCCTCGGCA--GGGCAGAAGA 121504
Query 23322 GACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381
| ||| || | || || || ||| || || || || ||||| || ||
Sbjct 121505 GGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGCAA 121564
Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441
|||||| ||||| || || |||||||| |||||| |||||| | || | || |
Sbjct 121565 AGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACT 121624
Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501
| || | ||| || ||||||||||||||||| | ||| |||||||| || | ||| ||||
Sbjct 121625 CGAAAATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTTGC 121684
Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561
| ||||| |||||||| || ||||||||||||||||| | ||||| || | || ||||
Sbjct 121685 CTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGT 121744
Query 23562 TGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621
| || |||| ||| || | ||| || | || || | ||||| | ||
Sbjct 121745 TCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATTGTGGATCGAGA 121804
Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681
||| ||||| || | | || || || | ||| || || || |||||||||||||
Sbjct 121805 GACCGATGCCGCCTGCAGTCTTGGAGATGAGCGCACACGTCTTGAGCGTGTCGTAGATGC 121864
Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741
||||||| ||| || || ||| || | ||| ||||| || | |||| | ||||
Sbjct 121865 CCTCGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCG 121924
Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801
| |||| ||| || ||||| |||||||||||||| | | |||||| |||||||
Sbjct 121925 TGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGATTGT 121984
Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861
|||| ||||||||| |||||||| || ||||| || |||| ||||||||||| | ||
Sbjct 121985 ACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAGCA 122044
Query 23862 TGTATTGAGGTCTCTCGACC 23881
||| || |||| |||| ||
Sbjct 122045 TGTGCTGCGGTCGCTCGGCC 122064
Score = 194 bits (214), Expect = 1e-44
Identities = 404/596 (68%), Gaps = 7/596 (1%)
Strand=Plus/Plus
Query 22099 GGCGGTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATA 22158
|| || || ||| || || |||| |||||| |||| | ||||| || |||||
Sbjct 120130 GGTGGCCTGGTCGACGGTGAACTTGATGGCGCCGACGGCGGCGCGAGTGCGGAGGTAATA 120189
Query 22159 CATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT-CCAT 22217
|||||||||||| |||||| ||||||| ||||||| || |||||||| | | ||||
Sbjct 120190 CATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAAAAGTGCATCGACGTGAGCTGCGCCAT 120249
Query 22218 AACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGAT 22277
| ||||| | | || || |||| |||||| ||| || || ||||| || || |
Sbjct 120250 AG-TCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCAATGAACGCGCCGCGGT 120308
Query 22278 CGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCC 22337
||||||| | | || | | ||| || ||||| ||||||||||| | ||
Sbjct 120309 CGGCGGCGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACGGTCTTGTAGATGCGCT 120368
Query 22338 TGATCTCTAACGGTATCGATTCGATCCT-CTGGACGGACCCGTTATTGTGTATGATCAAA 22396
||| ||| || || | || | | ||||| ||| ||||| | ||||||
Sbjct 120369 TGAGCTCGTCGGGGAT-GCCGGGAACGTTCTGGATGGAGCCGTTGTGCGCGATGATCGTG 120427
Query 22397 TTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTC 22456
|| || |||| |||||||||| ||| | || | || || || ||||
Sbjct 120428 TTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTG 120487
Query 22457 ACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCG 22516
|| || || |||||||||| | ||||||||| ||| |||||||| ||| |||| |||
Sbjct 120488 ACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGGCTCG 120547
Query 22517 AAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576
|| | || ||| || || ||||| |||||| ||||||||||||||||| | |
Sbjct 120548 AACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGACGCGGTCGGCATCGGCGCGCAGACG 120607
Query 22577 AGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGA 22636
|||||||| | | |||||||| | || || ||| | | | ||||||||||||
Sbjct 120608 AGCGAGTTGCGGATGCCGTGCTGCGCGATCTTCTCCTTCAACTCGGCCCAGTCCCACAGG 120667
Query 22637 TCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGG 22692
|| | ||||| || || ||||| ||||| ||||| | |||| | ||||| ||
Sbjct 120668 TCCGTGGGCGTGAC---GTTCCACAGGTCGTACTGCAAGAGGCCGTGGCTCGCGGG 120720
>seq6
Length=1276814
Score = 95.1 bits (104), Expect = 1e-14
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| |||||||| ||||| || || ||||| || |||||| |||| || || | ||
Sbjct 942305 CATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTC 942246
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| |||| | ||||| | || ||||||||| ||| | || ||||||||
Sbjct 942245 CGACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCA 942186
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348
||| || | || ||||| ||||| ||| | || |||
Sbjct 942185 GCAACGCTTGATCTTCGCGGGCAAGCAGCTCGAGGAC 942149
>seq4
Length=1405664
Score = 86.0 bits (94), Expect = 6e-12
Identities = 125/177 (71%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 31228 GATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGA 31287
|||||| |||| ||||| ||||||||| |||| | ||||| | || |||
Sbjct 913761 GATCACTCTCGAGGTTGAGTCGTCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGA 913820
Query 31288 CAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||| || | || |||||||||||||| | || ||||| ||||| ||| | || ||
Sbjct 913821 CAAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGA 913880
Query 31348 CTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
| | || | ||||| || ||||| || ||||| ||||| || || || || ||
Sbjct 913881 CGGTCGCACGCTCAGCGACTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCT 913937
Score = 82.4 bits (90), Expect = 7e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022
|||| |||| | || ||||||| ||||||||||| || || ||||| || ||| ||
Sbjct 862507 TTCGGCGAGCGCCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCATTC 862448
Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072
||| | || || ||| | ||||| |||||| |||||||||| || || ||
Sbjct 862447 GCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACTTT 862398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766188260960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |