Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq23 293 2e-74 seq6 95.1 1e-14 seq4 86.0 6e-12 >seq23 Length=148841 Score = 293 bits (324), Expect = 2e-74 Identities = 510/740 (69%), Gaps = 4/740 (1%) Strand=Plus/Plus Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 ||||||||||||||| | || |||||||||||||||| | ||||| || || ||| Sbjct 121327 TCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTACCAG 121386 Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAAC 23263 | |||| ||| | || ||| | | || || | ||||||||| | | | | | Sbjct 121387 AGCTTCTGTGCGGGCACGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAAGAGC 121446 Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATT--GCATCGGACACATGA 23321 | | || ||| ||||||| ||| || ||||||| | ||| || || | || Sbjct 121447 TCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCCTCGGCA--GGGCAGAAGA 121504 Query 23322 GACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381 | ||| || | || || || ||| || || || || ||||| || || Sbjct 121505 GGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGCAA 121564 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441 |||||| ||||| || || |||||||| |||||| |||||| | || | || | Sbjct 121565 AGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACT 121624 Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501 | || | ||| || ||||||||||||||||| | ||| |||||||| || | ||| |||| Sbjct 121625 CGAAAATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTTGC 121684 Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561 | ||||| |||||||| || ||||||||||||||||| | ||||| || | || |||| Sbjct 121685 CTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGT 121744 Query 23562 TGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621 | || |||| ||| || | ||| || | || || | ||||| | || Sbjct 121745 TCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATTGTGGATCGAGA 121804 Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681 ||| ||||| || | | || || || | ||| || || || ||||||||||||| Sbjct 121805 GACCGATGCCGCCTGCAGTCTTGGAGATGAGCGCACACGTCTTGAGCGTGTCGTAGATGC 121864 Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741 ||||||| ||| || || ||| || | ||| ||||| || | |||| | |||| Sbjct 121865 CCTCGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCG 121924 Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801 | |||| ||| || ||||| |||||||||||||| | | |||||| ||||||| Sbjct 121925 TGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGATTGT 121984 Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861 |||| ||||||||| |||||||| || ||||| || |||| ||||||||||| | || Sbjct 121985 ACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAGCA 122044 Query 23862 TGTATTGAGGTCTCTCGACC 23881 ||| || |||| |||| || Sbjct 122045 TGTGCTGCGGTCGCTCGGCC 122064 Score = 194 bits (214), Expect = 1e-44 Identities = 404/596 (68%), Gaps = 7/596 (1%) Strand=Plus/Plus Query 22099 GGCGGTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATA 22158 || || || ||| || || |||| |||||| |||| | ||||| || ||||| Sbjct 120130 GGTGGCCTGGTCGACGGTGAACTTGATGGCGCCGACGGCGGCGCGAGTGCGGAGGTAATA 120189 Query 22159 CATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT-CCAT 22217 |||||||||||| |||||| ||||||| ||||||| || |||||||| | | |||| Sbjct 120190 CATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAAAAGTGCATCGACGTGAGCTGCGCCAT 120249 Query 22218 AACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGAT 22277 | ||||| | | || || |||| |||||| ||| || || ||||| || || | Sbjct 120250 AG-TCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCAATGAACGCGCCGCGGT 120308 Query 22278 CGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCC 22337 ||||||| | | || | | ||| || ||||| ||||||||||| | || Sbjct 120309 CGGCGGCGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACGGTCTTGTAGATGCGCT 120368 Query 22338 TGATCTCTAACGGTATCGATTCGATCCT-CTGGACGGACCCGTTATTGTGTATGATCAAA 22396 ||| ||| || || | || | | ||||| ||| ||||| | |||||| Sbjct 120369 TGAGCTCGTCGGGGAT-GCCGGGAACGTTCTGGATGGAGCCGTTGTGCGCGATGATCGTG 120427 Query 22397 TTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTC 22456 || || |||| |||||||||| ||| | || | || || || |||| Sbjct 120428 TTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTG 120487 Query 22457 ACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCG 22516 || || || |||||||||| | ||||||||| ||| |||||||| ||| |||| ||| Sbjct 120488 ACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGGCTCG 120547 Query 22517 AAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576 || | || ||| || || ||||| |||||| ||||||||||||||||| | | Sbjct 120548 AACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGACGCGGTCGGCATCGGCGCGCAGACG 120607 Query 22577 AGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGA 22636 |||||||| | | |||||||| | || || ||| | | | |||||||||||| Sbjct 120608 AGCGAGTTGCGGATGCCGTGCTGCGCGATCTTCTCCTTCAACTCGGCCCAGTCCCACAGG 120667 Query 22637 TCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGG 22692 || | ||||| || || ||||| ||||| ||||| | |||| | ||||| || Sbjct 120668 TCCGTGGGCGTGAC---GTTCCACAGGTCGTACTGCAAGAGGCCGTGGCTCGCGGG 120720 >seq6 Length=1276814 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || ||||| || |||||| |||| || || | || Sbjct 942305 CATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTC 942246 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| | || ||||||||| ||| | || |||||||| Sbjct 942245 CGACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCA 942186 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||| || | || ||||| ||||| ||| | || ||| Sbjct 942185 GCAACGCTTGATCTTCGCGGGCAAGCAGCTCGAGGAC 942149 >seq4 Length=1405664 Score = 86.0 bits (94), Expect = 6e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 31228 GATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGA 31287 |||||| |||| ||||| ||||||||| |||| | ||||| | || ||| Sbjct 913761 GATCACTCTCGAGGTTGAGTCGTCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGA 913820 Query 31288 CAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || | || |||||||||||||| | || ||||| ||||| ||| | || || Sbjct 913821 CAAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGA 913880 Query 31348 CTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | | || | ||||| || ||||| || ||||| ||||| || || || || || Sbjct 913881 CGGTCGCACGCTCAGCGACTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCT 913937 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 |||| |||| | || ||||||| ||||||||||| || || ||||| || ||| || Sbjct 862507 TTCGGCGAGCGCCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCATTC 862448 Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072 ||| | || || ||| | ||||| |||||| |||||||||| || || || Sbjct 862447 GCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACTTT 862398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766188260960