Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq23 123 3e-23 seq4 100 4e-16 seq15 91.5 2e-13 >seq23 Length=148841 Score = 123 bits (136), Expect = 3e-23 Identities = 361/553 (65%), Gaps = 10/553 (2%) Strand=Plus/Plus Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 ||| || |||| | || || || | ||| ||||| || |||||||| || || | || Sbjct 121509 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGCAAAGAA 121568 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 | || | | | ||||| || || ||||| || ||||||||| | | Sbjct 121569 CAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 121628 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 ||| || | |||||||| || | ||| ||||| | | ||||| || ||||| ||||| Sbjct 121629 AATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTTGCCTCC 121688 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 ||| || | ||| | || ||||| || || || | | ||| || || || ||||| || Sbjct 121689 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 121748 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547 || || || |||| ||| || || | || || ||||| || || ||||| Sbjct 121749 GTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATTGTGGATCGAGAGACC 121808 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTGTCATAGATGCCTT 63606 || || ||||| | || ||||| | || || ||| || | |||||| |||||||| | Sbjct 121809 GATGCCGCCTGCAGTCTTGGAGATGAGCGCACA-CGTCTTGAGCGTGTCGTAGATGCCCT 121867 Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666 | || || || |||| ||| || || || || | || | | | || | Sbjct 121868 CGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCGTGC 121927 Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726 | || || || | || || || ||||||||||| | || || | |||||||||| Sbjct 121928 CGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGATTGTACG 121987 Query 63727 TCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 |||| || || ||| || || || | |||| || || ||||| ||||| | | Sbjct 121988 TCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATGAGC 122043 Query 63783 ATGTGCTGAGGTC 63795 |||||||| |||| Sbjct 122044 ATGTGCTGCGGTC 122056 >seq4 Length=1405664 Score = 100 bits (110), Expect = 4e-16 Identities = 119/161 (74%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || || |||||||||||||| | ||| ||||| || ||||| || ||||| |||||||| Sbjct 862395 GAGAAAGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAATGAG 862454 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 ||||| |||||||| || || || || ||||| || | || | ||| || | ||| | Sbjct 862455 CCGGAGAAGAAGATGCCCTCGACGGCGGCAAACGCGACCAGGCGCTCGCCGAAGACGGAG 862514 Query 33750 CTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 | ||| | ||||| | | ||||| ||||||||||| Sbjct 862515 CGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 862555 >seq15 Length=541629 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/161 (73%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 |||||||| | |||||||| | ||| ||||| || ||||| || || || ||||| || Sbjct 263178 GAAAACGTCAAGCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAAATCGAGGCGAACGAG 263237 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 ||||| |||||||| || || || ||||| || |||| |||| || || | ||||| Sbjct 263238 CCGGAGAAGAAGATGCCCTCGACAGCAGCGAAAGCAACCAGTCGTTCCGCAAAGACGGCG 263297 Query 33750 CT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 | ||| |||||| | ||||| ||||||||||| Sbjct 263298 CGAGGGTCCGAAATCCACCGCAGCGCCCAGTCGGCCTTCTT 263338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817300836640