Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq23 125 9e-24 seq4 87.8 2e-12 >seq23 Length=148841 Score = 125 bits (138), Expect = 9e-24 Identities = 366/556 (66%), Gaps = 16/556 (3%) Strand=Plus/Plus Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||| || |||| | || || || | ||| ||||| || |||||||| || || | || Sbjct 121509 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGCAAAGAA 121568 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 || || | | | ||||| || || ||||| || ||||||||| | | Sbjct 121569 CAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 121628 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 ||| || |||||||| || | ||| ||||| | | ||||| || ||||| ||||| Sbjct 121629 AATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTTGCCTCC 121688 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 ||| || | ||| | || ||||| || || || | | ||| || || || || || || Sbjct 121689 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 121748 Query 66281 TGTA-CCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGAC 66339 ||| || || || |||| ||| || || | || || ||||| || || |||| Sbjct 121749 -GTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATTGTGGATCGAGAGAC 121807 Query 66340 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCC 66398 | || || ||||| | || ||||| | || || ||| || | ||| || ||||||||| Sbjct 121808 CGATGCCGCCTGCAGTCTTGGAGATGAGCGCACA-CGTCTTGAGCGTGTCGTAGATGCCC 121866 Query 66399 TCTATACTATCATCCATCATGTTAAGTAGAAA--ACAGCTAGACATTTGGTGACGACTAG 66456 || || || ||| |||| ||| || || || | ||| | || || | | Sbjct 121867 TCGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--G 121924 Query 66457 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 66516 | || || || || | || || || ||||||||||| | || || | ||||||| Sbjct 121925 TGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGATTGT 121984 Query 66517 ACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATT 66572 ||||||| || || ||| || || || | |||| || || ||||| ||||| Sbjct 121985 ACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATG 122040 Query 66573 AACATGTGCTGAGGTC 66588 | ||||||||| |||| Sbjct 122041 AGCATGTGCTGCGGTC 122056 >seq4 Length=1405664 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/162 (72%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 36205 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 36264 ||| || |||||||||||||| | ||| ||||| || ||||| || |||||||| ||||| Sbjct 862394 GGAGAAAGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAATGA 862453 Query 36265 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 36324 || || ||||| || || || || || ||||| || | || | ||| || | ||| Sbjct 862454 GCCGGAGAAGAAGATGCCCTCGACGGCGGCAAACGCGACCAGGCGCTCGCCGAAGACGGA 862513 Query 36325 ACTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTT 36363 | ||| | ||||| | | ||||| ||||||||||| Sbjct 862514 GCGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 862555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172487367920