Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq26 100 2e-16 seq25 100 2e-16 >seq26 Length=12709 Score = 100 bits (110), Expect = 2e-16 Identities = 128/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGT-GCACAAAGTCTCC 20983 || || || ||||||| | ||| ||||| ||||| || ||| || | | || || Sbjct 11712 AGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCC-AAGCTGGAGGATGAATTCGTG 11770 Query 20984 CGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTT 21043 ||| || | | |||||| ||||||||| | ||||||||||||||| ||||||||| Sbjct 11771 CGGAATCGTGTCGGTGACGAGAGCGATCATGTGCGTCAGGAGGGCGTACGAGGCGATGTT 11830 Query 21044 AAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAG 21097 || || || |||||||| | |||||| || | |||||||| ||||||| || Sbjct 11831 GAAGGGTACGCCGAGGCCGAGGTCGGCAGAGCGCTGGTACATGAGGCAGGAGAG 11884 >seq25 Length=12709 Score = 100 bits (110), Expect = 2e-16 Identities = 128/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGT-GCACAAAGTCTCC 20983 || || || ||||||| | ||| ||||| ||||| || ||| || | | || || Sbjct 11712 AGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCC-AAGCTGGAGGATGAATTCGTG 11770 Query 20984 CGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTT 21043 ||| || | | |||||| ||||||||| | ||||||||||||||| ||||||||| Sbjct 11771 CGGAATCGTGTCGGTGACGAGAGCGATCATGTGCGTCAGGAGGGCGTACGAGGCGATGTT 11830 Query 21044 AAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAG 21097 || || || |||||||| | |||||| || | |||||||| ||||||| || Sbjct 11831 GAAGGGTACGCCGAGGCCGAGGTCGGCAGAGCGCTGGTACATGAGGCAGGAGAG 11884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427775801886240