Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq23 129 8e-25 seq4 102 1e-16 >seq23 Length=148841 Score = 129 bits (142), Expect = 8e-25 Identities = 401/613 (65%), Gaps = 16/613 (3%) Strand=Plus/Plus Query 79863 GAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCA 79922 ||||||||| || | || |||| | ||| || ||| |||| || | | | ||| Sbjct 121452 GAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCCTCGGCAGGGCAGAAGAGGGGCCA 121511 Query 79923 CTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 79982 || || | | || || || | ||| ||||| || |||||||| || || | || | Sbjct 121512 GTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGCAAAGAACAA 121571 Query 79983 ATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 80042 || | | | |||||| || || ||||| || ||||||||| | | ||| Sbjct 121572 GTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAAAT 121631 Query 80043 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTG 80102 || | |||||||| || | ||| ||||| | | || || || ||||| |||||||| Sbjct 121632 GTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTTGCCTCCCTG 121691 Query 80103 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGT 80162 || | ||| | || ||||| || || || | | ||| || || || || || || || Sbjct 121692 GTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA-GT 121750 Query 80163 A-CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTA 80221 | || || || |||| ||| || || | || || ||||| || || ||||| | Sbjct 121751 AGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATTGTGGATCGAGAGACCGA 121810 Query 80222 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCT 80280 | || ||||| | || ||||| | || || ||| || | ||| || ||||||||||| Sbjct 121811 TGCCGCCTGCAGTCTTGGAGATGAGCGCACA-CGTCTTGAGCGTGTCGTAGATGCCCTCG 121869 Query 80281 ATGCTATCATCAATCATGTTAAGTAGAAA--ACAGCTAGACATTTGGTGACGACTAGTTC 80338 || || || |||| ||| || || || | ||| | || || | || | Sbjct 121870 ATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--GTGC 121927 Query 80339 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 80398 | || || || | || || || ||||||||||| | || |||| |||||||||| Sbjct 121928 CGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGATTGTACG 121987 Query 80399 TCTCAATAGCTGATTCTATATC----CCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 |||| || || || || || || | |||| || |||||||| ||||| | | Sbjct 121988 TCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATGAGC 122043 Query 80455 ATGTGCTGAGGTC 80467 |||||||| |||| Sbjct 122044 ATGTGCTGCGGTC 122056 >seq4 Length=1405664 Score = 102 bits (112), Expect = 1e-16 Identities = 122/162 (75%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 50007 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 50066 ||| || |||||||||||||| | ||| ||||| || ||||| || |||||||| ||||| Sbjct 862394 GGAGAAAGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAATGA 862453 Query 50067 CCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC-ATAACTG- 50124 || || |||||||| || || || |||||||| || || || | ||| || | || | Sbjct 862454 GCCGGAGAAGAAGATGCCCTCGACGGCGGCAAACGCGACCAGGCGCTCGCCGAAGACGGA 862513 Query 50125 GCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 50165 ||| | ||| ||||| | | ||||| ||||||||||| Sbjct 862514 GCGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 862555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268458822320