Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq23 129 8e-25
seq4 102 1e-16
>seq23
Length=148841
Score = 129 bits (142), Expect = 8e-25
Identities = 401/613 (65%), Gaps = 16/613 (3%)
Strand=Plus/Plus
Query 79863 GAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCA 79922
||||||||| || | || |||| | ||| || ||| |||| || | | | |||
Sbjct 121452 GAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCCTCGGCAGGGCAGAAGAGGGGCCA 121511
Query 79923 CTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 79982
|| || | | || || || | ||| ||||| || |||||||| || || | || |
Sbjct 121512 GTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGCAAAGAACAA 121571
Query 79983 ATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 80042
|| | | | |||||| || || ||||| || ||||||||| | | |||
Sbjct 121572 GTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAAAT 121631
Query 80043 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTG 80102
|| | |||||||| || | ||| ||||| | | || || || ||||| ||||||||
Sbjct 121632 GTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTTGCCTCCCTG 121691
Query 80103 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGT 80162
|| | ||| | || ||||| || || || | | ||| || || || || || || ||
Sbjct 121692 GTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA-GT 121750
Query 80163 A-CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTA 80221
| || || || |||| ||| || || | || || ||||| || || ||||| |
Sbjct 121751 AGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATTGTGGATCGAGAGACCGA 121810
Query 80222 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCT 80280
| || ||||| | || ||||| | || || ||| || | ||| || |||||||||||
Sbjct 121811 TGCCGCCTGCAGTCTTGGAGATGAGCGCACA-CGTCTTGAGCGTGTCGTAGATGCCCTCG 121869
Query 80281 ATGCTATCATCAATCATGTTAAGTAGAAA--ACAGCTAGACATTTGGTGACGACTAGTTC 80338
|| || || |||| ||| || || || | ||| | || || | || |
Sbjct 121870 ATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--GTGC 121927
Query 80339 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 80398
| || || || | || || || ||||||||||| | || |||| ||||||||||
Sbjct 121928 CGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGATTGTACG 121987
Query 80399 TCTCAATAGCTGATTCTATATC----CCATTGATGAATTCCTACCGCGACACGCATTAAC 80454
|||| || || || || || || | |||| || |||||||| ||||| | |
Sbjct 121988 TCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATGAGC 122043
Query 80455 ATGTGCTGAGGTC 80467
|||||||| ||||
Sbjct 122044 ATGTGCTGCGGTC 122056
>seq4
Length=1405664
Score = 102 bits (112), Expect = 1e-16
Identities = 122/162 (75%), Gaps = 3/162 (2%)
Strand=Plus/Plus
Query 50007 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 50066
||| || |||||||||||||| | ||| ||||| || ||||| || |||||||| |||||
Sbjct 862394 GGAGAAAGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAATGA 862453
Query 50067 CCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC-ATAACTG- 50124
|| || |||||||| || || || |||||||| || || || | ||| || | || |
Sbjct 862454 GCCGGAGAAGAAGATGCCCTCGACGGCGGCAAACGCGACCAGGCGCTCGCCGAAGACGGA 862513
Query 50125 GCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 50165
||| | ||| ||||| | | ||||| |||||||||||
Sbjct 862514 GCGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 862555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718268458822320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |