Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq23 123 3e-23 seq4 87.8 2e-12 >seq23 Length=148841 Score = 123 bits (136), Expect = 3e-23 Identities = 352/536 (66%), Gaps = 14/536 (3%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 || || | ||| ||||| || |||||||| || || | || | || | | | | Sbjct 121528 ACACGCTCCATGAAGAGGTCGGGAATCCACAGCGCAAAGAACAAGTCGCGCGCACGGACC 121587 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || || ||||| || ||||||||| | | ||| || | |||||||| Sbjct 121588 TCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAAATGTCGGCGTGCCACGGC 121647 Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201 || | ||| ||||| | | || || || ||||| |||||||| || | ||| | || Sbjct 121648 TCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCC 121707 Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261 ||||| || || || | | ||| || || || || || || || || || |||| | Sbjct 121708 GTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCG 121767 Query 72262 ATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTA 72321 || || || | || || |||||| || || ||||| || || ||||| | || Sbjct 121768 ATGTACGAGCCGGTCGCGCGGATATTGTGGATCGAGAGACCGATGCCGCCTGCAGTCTTG 121827 Query 72322 GAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCAT 72380 ||||| | || || ||| || | ||| || ||||||||||| || || ||| |||| Sbjct 121828 GAGATGAGCGCACA-CGTCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCAT 121886 Query 72381 GTTAAGTAGAAA--ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 72438 ||| || || || | ||| | || || | || || || || || | || Sbjct 121887 CGTAACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--GTGCCGGCGTTGAAGAGCGTC 121944 Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 72498 || || ||||||||||| | || |||| |||||||||||||| || || || Sbjct 121945 GGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGATTGTACGTCTCGATGGCGCGGTCA 122004 Query 72499 ATATC----CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTC 72550 || || || | |||| || |||||||| ||||| | ||| ||||| |||| Sbjct 122005 ATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATGAGCATGTGCTGCGGTC 122056 >seq4 Length=1405664 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/162 (72%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 42112 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGA 42171 ||| || |||||||||||||| | ||| ||||| || ||||| || || ||||| ||||| Sbjct 862394 GGAGAAAGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAATGA 862453 Query 42172 TCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 42231 || || |||||||| || || || || ||||| || | || | ||| || | ||| Sbjct 862454 GCCGGAGAAGAAGATGCCCTCGACGGCGGCAAACGCGACCAGGCGCTCGCCGAAGACGGA 862513 Query 42232 ACTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 | ||| | ||||| | | ||||| ||||||||||| Sbjct 862514 GCGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 862555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138881208880