Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq23 123 3e-23
seq4 87.8 2e-12
>seq23
Length=148841
Score = 123 bits (136), Expect = 3e-23
Identities = 352/536 (66%), Gaps = 14/536 (3%)
Strand=Plus/Plus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
|| || | ||| ||||| || |||||||| || || | || | || | | | |
Sbjct 121528 ACACGCTCCATGAAGAGGTCGGGAATCCACAGCGCAAAGAACAAGTCGCGCGCACGGACC 121587
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
||||| || || ||||| || ||||||||| | | ||| || | ||||||||
Sbjct 121588 TCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAAATGTCGGCGTGCCACGGC 121647
Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201
|| | ||| ||||| | | || || || ||||| |||||||| || | ||| | ||
Sbjct 121648 TCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCC 121707
Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261
||||| || || || | | ||| || || || || || || || || || |||| |
Sbjct 121708 GTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCG 121767
Query 72262 ATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTA 72321
|| || || | || || |||||| || || ||||| || || ||||| | ||
Sbjct 121768 ATGTACGAGCCGGTCGCGCGGATATTGTGGATCGAGAGACCGATGCCGCCTGCAGTCTTG 121827
Query 72322 GAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCAT 72380
||||| | || || ||| || | ||| || ||||||||||| || || ||| ||||
Sbjct 121828 GAGATGAGCGCACA-CGTCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCAT 121886
Query 72381 GTTAAGTAGAAA--ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 72438
||| || || || | ||| | || || | || || || || || | ||
Sbjct 121887 CGTAACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--GTGCCGGCGTTGAAGAGCGTC 121944
Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 72498
|| || ||||||||||| | || |||| |||||||||||||| || || ||
Sbjct 121945 GGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGATTGTACGTCTCGATGGCGCGGTCA 122004
Query 72499 ATATC----CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTC 72550
|| || || | |||| || |||||||| ||||| | ||| ||||| ||||
Sbjct 122005 ATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATGAGCATGTGCTGCGGTC 122056
>seq4
Length=1405664
Score = 87.8 bits (96), Expect = 2e-12
Identities = 117/162 (72%), Gaps = 3/162 (2%)
Strand=Plus/Plus
Query 42112 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGA 42171
||| || |||||||||||||| | ||| ||||| || ||||| || || ||||| |||||
Sbjct 862394 GGAGAAAGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAATGA 862453
Query 42172 TCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 42231
|| || |||||||| || || || || ||||| || | || | ||| || | |||
Sbjct 862454 GCCGGAGAAGAAGATGCCCTCGACGGCGGCAAACGCGACCAGGCGCTCGCCGAAGACGGA 862513
Query 42232 ACTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTT 42270
| ||| | ||||| | | ||||| |||||||||||
Sbjct 862514 GCGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 862555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138881208880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |