Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 2e-14 seq13 93.3 6e-14 seq26 91.5 2e-13 seq25 91.5 2e-13 >seq4 Length=1405664 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 ||||| || || |||||||| |||||||||||||| || || || ||| ||||||| Sbjct 862495 CTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCATTCGCGTCCATCTTC 862436 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||||||||||||||||| | ||||||||||| || Sbjct 862435 TGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCAC 862401 >seq13 Length=912588 Score = 93.3 bits (102), Expect = 6e-14 Identities = 168/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 |||||||||| ||| || ||||||| || | ||| |||||||| | | || || | Sbjct 831214 CCGTGCGTCAAGTGTCCGCCGTCGGCGAGGTTGAGGCCCATGATGCGGTCCTGGGGCTGG 831273 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | || | ||| | ||||||||||||| ||||||||||||| || || || || Sbjct 831274 ATGAGCGCCGTGAAGGCGGCAAAGTTGGCGGTCGAGCCCGAGTAAGGCTGGACGTTGACG 831333 Query 127567 CCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCG 127626 ||||| | || ||| | | |||||| ||| |||| ||| || | |||| Sbjct 831334 CCCCACTTGGCGCCGTCGAGGTGGAACGCCTCGAGCGCGCGCTTCTGGCACAGGACTTCG 831393 Query 127627 ATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAGTAC 127686 | |||| | |||||| || || ||||| || ||||| ||||||||||||| Sbjct 831394 AGCTCGTCGACGACCTCGTTGCCGCCGTAGTAGCGAGCGCCGGGGAGACCCTCCGAGTAC 831453 Query 127687 TTGTTG 127692 |||||| Sbjct 831454 TTGTTG 831459 >seq26 Length=12709 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 70307 TCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCA 70366 || ||| | ||||| ||| | ||||||| | |||||||| |||||||| ||||| || Sbjct 11881 TCCTGCCTCATGTACCAGCGCTCTGCCGACCTCGGCCTCGGCGTACCCTTCAACATCGCC 11822 Query 70367 AGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTC 70426 || | | ||||||||||||| |||| | | |||| | || ||||||| ||| Sbjct 11821 TCGTACGCCCTCCTGACGCACATGATCGCTCTCGTCACCGACACGATTCCGCACGAATTC 11762 Query 70427 GTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAA 70486 | | | |||||||||| ||||| || | | ||| ||||||| | ||| ||| Sbjct 11761 ATCCTCCAGCTTGGCGACGCGCACGTCTACCTCGACCACGTCGAGCCGCTCAAGACGCAG 11702 Query 70487 CTCGAACGGGAGCCG 70501 ||||| ||| |||| Sbjct 11701 CTCGAGCGGACGCCG 11687 >seq25 Length=12709 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 70307 TCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCA 70366 || ||| | ||||| ||| | ||||||| | |||||||| |||||||| ||||| || Sbjct 11881 TCCTGCCTCATGTACCAGCGCTCTGCCGACCTCGGCCTCGGCGTACCCTTCAACATCGCC 11822 Query 70367 AGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTC 70426 || | | ||||||||||||| |||| | | |||| | || ||||||| ||| Sbjct 11821 TCGTACGCCCTCCTGACGCACATGATCGCTCTCGTCACCGACACGATTCCGCACGAATTC 11762 Query 70427 GTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAA 70486 | | | |||||||||| ||||| || | | ||| ||||||| | ||| ||| Sbjct 11761 ATCCTCCAGCTTGGCGACGCGCACGTCTACCTCGACCACGTCGAGCCGCTCAAGACGCAG 11702 Query 70487 CTCGAACGGGAGCCG 70501 ||||| ||| |||| Sbjct 11701 CTCGAGCGGACGCCG 11687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058847996880