Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq26 89.7 3e-13 seq25 89.7 3e-13 >seq26 Length=12709 Score = 89.7 bits (98), Expect = 3e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 25406 CCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAG 25465 || ||||||||| ||||| ||||| || ||||| || ||||||||||| ||||| || || Sbjct 11693 CCGCTCGAGCTGCGTCTTGAGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCAAG 11752 Query 25466 AGTGTGGACAAACTC-TCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGA 25524 | ||| || || | | | || | |||| ||| ||| ||||||| ||| |||| Sbjct 11753 CTGGAGGATGAATTCGTGCGGAATCGTG-TCGGTGACGAGAGCGATCATGTGCGTCAGGA 11811 Query 25525 GAAAGTAGCTGGCGATGTTAAAGGGTACCCCGA 25557 | ||| ||||||||| |||||||| |||| Sbjct 11812 GGGCGTACGAGGCGATGTTGAAGGGTACGCCGA 11844 Score = 86.0 bits (94), Expect = 4e-12 Identities = 120/165 (73%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 25799 ACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCC 25858 ||||| ||| |||| || || ||||||| ||| || |||| | ||||| ||||| | Sbjct 12244 ACCTCTACTC--ACCCATAGACAGGTCCTAAGTCACCCACTTCACGGTGCTGCAAGCCTC 12301 Query 25859 TCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGA 25918 | || | || |||| | || ||| ||||||||||||| ||||||||||| | | Sbjct 12302 GCGAGTCGAGGAACTCTCGGCTGCCGTTGCCGTCCCAGATCTTGACCCCCTTCTCCGCCA 12361 Query 25919 GCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCC 25962 | |||| || | ||| | ||||| ||| ||||||| ||||||| Sbjct 12362 ACACTTTCGAATCGGTGCAGCCCTC-GACAAACCACAACAGCTCC 12405 >seq25 Length=12709 Score = 89.7 bits (98), Expect = 3e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 25406 CCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAG 25465 || ||||||||| ||||| ||||| || ||||| || ||||||||||| ||||| || || Sbjct 11693 CCGCTCGAGCTGCGTCTTGAGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCAAG 11752 Query 25466 AGTGTGGACAAACTC-TCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGA 25524 | ||| || || | | | || | |||| ||| ||| ||||||| ||| |||| Sbjct 11753 CTGGAGGATGAATTCGTGCGGAATCGTG-TCGGTGACGAGAGCGATCATGTGCGTCAGGA 11811 Query 25525 GAAAGTAGCTGGCGATGTTAAAGGGTACCCCGA 25557 | ||| ||||||||| |||||||| |||| Sbjct 11812 GGGCGTACGAGGCGATGTTGAAGGGTACGCCGA 11844 Score = 86.0 bits (94), Expect = 4e-12 Identities = 120/165 (73%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 25799 ACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCC 25858 ||||| ||| |||| || || ||||||| ||| || |||| | ||||| ||||| | Sbjct 12244 ACCTCTACTC--ACCCATAGACAGGTCCTAAGTCACCCACTTCACGGTGCTGCAAGCCTC 12301 Query 25859 TCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGA 25918 | || | || |||| | || ||| ||||||||||||| ||||||||||| | | Sbjct 12302 GCGAGTCGAGGAACTCTCGGCTGCCGTTGCCGTCCCAGATCTTGACCCCCTTCTCCGCCA 12361 Query 25919 GCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCC 25962 | |||| || | ||| | ||||| ||| ||||||| ||||||| Sbjct 12362 ACACTTTCGAATCGGTGCAGCCCTC-GACAAACCACAACAGCTCC 12405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340137442473774