Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq9 140 5e-29 >seq9 Length=1185843 Score = 140 bits (154), Expect = 5e-29 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 1037812 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGTGGTGGT 1037753 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| ||||||| | |||| || |||| || | || | |||||||||||| Sbjct 1037752 GTCAAGCGTATCTCTGGCCTCATCTACGAGGAGACCCGCGGCGTCCTCAAGATCTTCCTC 1037693 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| | | |||| || | | ||| ||||||||||| || || ||||| |||||| Sbjct 1037692 GAGAACATCATCCGCGACTCGGTTACCTACACCGAGCACGCCAAGCGCAAGACGGTCACC 1037633 Query 16637 TCCATGGATATCGTCTATGC 16656 || | || ||||||| || Sbjct 1037632 TCGCTCGACGTCGTCTACGC 1037613 Score = 136 bits (150), Expect = 6e-28 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| ||||| ||||| ||||| Sbjct 783130 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGTGGC 783071 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || | |||| || |||| ||| | || | ||||||||| Sbjct 783070 GGTGTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 783011 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| | | |||| || | || || ||||||||||| || || ||||| ||| Sbjct 783010 CTCGAGAACATCATCCGCGACTCGGTCACGTACACCGAGCACGCCAAGCGCAAGACGGTC 782951 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||||| | || ||||||| || Sbjct 782950 ACCTCGCTCGACGTCGTCTACGC 782928 Score = 125 bits (138), Expect = 1e-24 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| ||||| || || || || Sbjct 748553 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCCCGCCGCGGC 748494 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || | |||| || |||| ||| | || | ||||||||| Sbjct 748493 GGTGTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 748434 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| | | || | || | || || ||||||||||| || || ||||| ||| Sbjct 748433 CTCGAGAACATCATYCGCGACTCGGTCACGTACACCGAGCACGCCAAGCGCAAGACGGTC 748374 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||||| | || ||||||| || Sbjct 748373 ACCTCGCTCGACGTCGTCTACGC 748351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075165256334