Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq23 122 1e-22
seq4 96.9 4e-15
seq15 86.0 8e-12
>seq23
Length=148841
Score = 122 bits (134), Expect = 1e-22
Identities = 363/555 (65%), Gaps = 14/555 (3%)
Strand=Plus/Plus
Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256
||| || |||| | || || || | ||| ||||| || |||||||| || || | ||
Sbjct 121509 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGCAAAGAA 121568
Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316
| || | | | ||||| || || ||||| || ||||||||| | |
Sbjct 121569 CAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 121628
Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376
||| || | |||||||| || | ||| ||||| | | ||||| || ||||| |||||
Sbjct 121629 AATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTTGCCTCC 121688
Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436
||| || | ||| | || ||||| || || || | | ||| || || || ||||| ||
Sbjct 121689 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 121748
Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63496
|| || || |||| ||| || || | || || ||||| || || |||||
Sbjct 121749 GTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATTGTGGATCGAGAGACC 121808
Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTGTCATAGATACCCT 63555
|| || ||||| | || ||||| | || || ||| || | |||||| ||||| ||||
Sbjct 121809 GATGCCGCCTGCAGTCTTGGAGATGAGCGCACA-CGTCTTGAGCGTGTCGTAGATGCCCT 121867
Query 63556 CTATGCTATCATCGATCATGTTAAGTAGAAAACAG--CTAGACATTTGGTGACGACTAGT 63613
| || || || |||| ||| || || || | ||| | || || | ||
Sbjct 121868 CGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--GT 121925
Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673
|| || || || | || || || ||||||||||| | || || | ||||||||
Sbjct 121926 GCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGATTGTA 121985
Query 63674 CGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTA 63729
|||||| || || ||| || || || | |||| || || ||||| ||||| |
Sbjct 121986 CGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATGA 122041
Query 63730 ACATGTGCTGAGGTC 63744
||||||||| ||||
Sbjct 122042 GCATGTGCTGCGGTC 122056
>seq4
Length=1405664
Score = 96.9 bits (106), Expect = 4e-15
Identities = 119/162 (73%), Gaps = 3/162 (2%)
Strand=Plus/Plus
Query 33351 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGA 33410
||| || |||||||||||||| | ||| ||||| || ||||| || ||||| ||||||||
Sbjct 862394 GGAGAAAGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAATGA 862453
Query 33411 TCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 33470
|| || |||||||| || || || || ||||| || | || | ||| || | |||
Sbjct 862454 GCCGGAGAAGAAGATGCCCTCGACGGCGGCAAACGCGACCAGGCGCTCGCCGAAGACGGA 862513
Query 33471 GCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTT 33509
|| ||| | ||||| | | ||||| |||||||||||
Sbjct 862514 GCGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 862555
>seq15
Length=541629
Score = 86.0 bits (94), Expect = 8e-12
Identities = 116/161 (72%), Gaps = 3/161 (2%)
Strand=Plus/Plus
Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411
|||||||| | |||||||| | ||| ||||| || ||||| || || || ||||| ||
Sbjct 263178 GAAAACGTCAAGCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAAATCGAGGCGAACGAG 263237
Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471
|| || |||||||| || || || ||||| || |||| |||| || || | |||||
Sbjct 263238 CCGGAGAAGAAGATGCCCTCGACAGCAGCGAAAGCAACCAGTCGTTCCGCAAAGACGGCG 263297
Query 33472 CT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33509
| ||| |||||| | ||||| |||||||||||
Sbjct 263298 CGAGGGTCCGAAATCCACCGCAGCGCCCAGTCGGCCTTCTT 263338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622946904100080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |