Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq23 122 1e-22 seq4 96.9 4e-15 seq15 86.0 8e-12 >seq23 Length=148841 Score = 122 bits (134), Expect = 1e-22 Identities = 363/555 (65%), Gaps = 14/555 (3%) Strand=Plus/Plus Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||| || |||| | || || || | ||| ||||| || |||||||| || || | || Sbjct 121509 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGCAAAGAA 121568 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 | || | | | ||||| || || ||||| || ||||||||| | | Sbjct 121569 CAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 121628 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 ||| || | |||||||| || | ||| ||||| | | ||||| || ||||| ||||| Sbjct 121629 AATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTTGCCTCC 121688 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 ||| || | ||| | || ||||| || || || | | ||| || || || ||||| || Sbjct 121689 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 121748 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63496 || || || |||| ||| || || | || || ||||| || || ||||| Sbjct 121749 GTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATTGTGGATCGAGAGACC 121808 Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTGTCATAGATACCCT 63555 || || ||||| | || ||||| | || || ||| || | |||||| ||||| |||| Sbjct 121809 GATGCCGCCTGCAGTCTTGGAGATGAGCGCACA-CGTCTTGAGCGTGTCGTAGATGCCCT 121867 Query 63556 CTATGCTATCATCGATCATGTTAAGTAGAAAACAG--CTAGACATTTGGTGACGACTAGT 63613 | || || || |||| ||| || || || | ||| | || || | || Sbjct 121868 CGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--GT 121925 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673 || || || || | || || || ||||||||||| | || || | |||||||| Sbjct 121926 GCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGATTGTA 121985 Query 63674 CGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTA 63729 |||||| || || ||| || || || | |||| || || ||||| ||||| | Sbjct 121986 CGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATGA 122041 Query 63730 ACATGTGCTGAGGTC 63744 ||||||||| |||| Sbjct 122042 GCATGTGCTGCGGTC 122056 >seq4 Length=1405664 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/162 (73%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 33351 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGA 33410 ||| || |||||||||||||| | ||| ||||| || ||||| || ||||| |||||||| Sbjct 862394 GGAGAAAGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAATGA 862453 Query 33411 TCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 33470 || || |||||||| || || || || ||||| || | || | ||| || | ||| Sbjct 862454 GCCGGAGAAGAAGATGCCCTCGACGGCGGCAAACGCGACCAGGCGCTCGCCGAAGACGGA 862513 Query 33471 GCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 || ||| | ||||| | | ||||| ||||||||||| Sbjct 862514 GCGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 862555 >seq15 Length=541629 Score = 86.0 bits (94), Expect = 8e-12 Identities = 116/161 (72%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 |||||||| | |||||||| | ||| ||||| || ||||| || || || ||||| || Sbjct 263178 GAAAACGTCAAGCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAAATCGAGGCGAACGAG 263237 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471 || || |||||||| || || || ||||| || |||| |||| || || | ||||| Sbjct 263238 CCGGAGAAGAAGATGCCCTCGACAGCAGCGAAAGCAACCAGTCGTTCCGCAAAGACGGCG 263297 Query 33472 CT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 | ||| |||||| | ||||| ||||||||||| Sbjct 263298 CGAGGGTCCGAAATCCACCGCAGCGCCCAGTCGGCCTTCTT 263338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946904100080