Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq23 235 1e-56 >seq23 Length=148841 Score = 235 bits (260), Expect = 1e-56 Identities = 504/742 (68%), Gaps = 16/742 (2%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || |||||||| ||| | ||||| || || | || ||||| || || |||| Sbjct 122060 GAGCGACCGCAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGAC 122001 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA-TTCACGCACGCCACGCCAAC 363566 ||| || || || || || || | | || ||| || |||||||| |||| || Sbjct 122000 CGCGCCATCGAGACGTACAATCTCATGTCGGAGCG-GTACTTTACGCACGCGTCGCCGAC 121942 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | ||| || || || | | || ||| | || || ||||| || | | ||||| Sbjct 121941 GCTCTTCAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTTACGATGAA 121882 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 |||||| || |||||||| |||| ||||| || |||| ||||| || || ||||||| Sbjct 121881 GGACGACTCGATCGAGGGCATCTACGACACGCTCAAGACGTGTGCGCTCATCTCCAAGAC 121822 Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCG 363745 ||||||||| || ||| | |||||||||||| | || || || | || |||| || Sbjct 121821 TGCAGGCGGCATCGGTCTCTCGATCCACAATATCCGCGCGACCGGCTCGT-ACATCGCCG 121763 Query 363746 GCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 |||| || |||||||| || | | |||||||| || |||| |||| || ||| Sbjct 121762 GCACGAACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGC 121703 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 | |||||||||||||| || |||||| || ||||| || || || |||||||| Sbjct 121702 GCTACGTCGACCAGGGAGGCAACAAGCGCCCTGGCGCGTTCGCCATCTACCTCGAGCCGT 121643 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 || ||||| ||||| ||||| || || ||||| || ||| || || ||||| | | Sbjct 121642 GGCACGCCGACATTTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCC 121583 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985 |||| || || |||||| ||| || ||| || | |||| || ||| |||| || || | Sbjct 121582 GTGCGCGCGACTTGTTCTTTGCGCTGTGGATTCCCGACCTCTTCATGGAGCGTGTCGA-G 121524 Query 363986 CAGGTAAG-AATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044 ||| | | ||| | ||||| ||||| ||| || || || ||| || | Sbjct 121523 CAGAACGGCGACTGGCCCCTCTTCTGCCCTGCCGAGGCGCCCGGACTCCACGAGGTCTAC 121464 Query 364045 GGTGACGACT--ATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG- 364101 |||||||| | | | |||| | ||| ||||| || |||||| || ||| Sbjct 121463 GGTGACGAGTTCAAGGAGCTC--TTCGAGAAGTACGAGAAGGAGGGTCGCGC---CAAGC 121409 Query 364102 --ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAA 364159 || | |||||||||||||| |||| ||| || | || | ||| | ||||| || | Sbjct 121408 GCACCGTGCCCGCACAGAAGCTCTGGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGGCA 121349 Query 364160 CACCCTATATGTTGTACAAAGA 364181 |||| ||| | ||||| || Sbjct 121348 ACCCCTTCATGCTCTACAAGGA 121327 Score = 107 bits (118), Expect = 5e-18 Identities = 290/439 (66%), Gaps = 6/439 (1%) Strand=Plus/Minus Query 364721 AGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGA 364780 |||| || | |||||||| ||||| ||||| ||||| || || || || |||| Sbjct 120629 AGCACGGCATCCGCAACTCGCTCGTCTGCGCGCCGATGCCGACCGCGTCGACCAGCCAGA 120570 Query 364781 TCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTC 364840 ||||||| ||||||| ||||| |||| || ||| | || | ||||| || | Sbjct 120569 TCCTCGGCTTCAACGAGGCGTTCGAGCCGTACACGTCCAACATCTACACCCGCCGCGTCC 120510 Query 364841 TTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGC 364900 | |||| || || | ||| || || | || || || || ||||||||| | Sbjct 120509 TCGCCGGCGAGTTCCAGGTCGTCAACCCCTGGCTCCTCCGCGACCTCGTCGACCGCGGCC 120450 Query 364901 TGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTC 364960 ||||| ||| ||||||||| |||||||| || || || | |||||| ||| Sbjct 120449 TGTGGAACGACGCGATGAAGAACACGATCATCGCGCACAACGGCTCCATCCAGAACGTTC 120390 Query 364961 CAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTC-CATGCGA 365019 | || | || || || || |||| || ||||| ||||| ||||| || || || || Sbjct 120389 CCGGCATCCCCGACGAGCTCAAGCGCATCTACAAGACCGTGTGGGAGATCTCGCA---GA 120333 Query 365020 A-CTC-TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTA 365077 | || |||| || | || ||||| ||||| || || || ||| |||||| | | Sbjct 120332 AGGTCGTCATCGACCTCGCCGCCGACCGCGGCGCGTTCATTGACCAGTCGCAGTCGCTCA 120273 Query 365078 ACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGA 365137 |||| | | | ||| || || |||| || || ||||| || ||||| |||| Sbjct 120272 ACGTCCACCTCTCGTCGCCGACTATGGCGCAGCTCACGTCGATGCACTTTTACGGCTGGA 120213 Query 365138 AATCCGGTCTTAAGACAGG 365156 | ||||| ||||| || Sbjct 120212 AGAAGGGTCTCAAGACGGG 120194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352965429716