Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 2e-12 seq15 84.2 2e-11 >seq6 Length=1276814 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 24026 GATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGA 24085 ||| ||| |||| |||||| | ||||||||||| | ||||| ||||| || Sbjct 941532 GATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGA 941473 Query 24086 CAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| || || || |||||||| || ||| | |||| | || |||||||| ||||| || Sbjct 941472 CAAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGA 941413 Query 24146 TGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 | | | | ||||| || ||||| || || || ||||| | ||| | ||||| || Sbjct 941412 CGGTCGCACGCTTAGCGACTACAACATCCAGAAGGAGTCTACGCTCCATCTGGTGTTGAG 941353 Query 24206 ATTGAGAGGAGGA 24218 ||| | |||||| Sbjct 941352 GTTGCGCGGAGGA 941340 >seq15 Length=541629 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104620 TTAGTCTTGCCCTCCAGAGAAATATTATTCATAAATTCGAAAGGATTCAAAGTCTTAAAA 104679 || ||||||||||||| || || | | ||| || ||||| || ||| | || | Sbjct 262820 TTGGTCTTGCCCTCCATCGAGATCATTTCCATGAAGTCGAACGGGTTCTCGGCATTGTAC 262879 Query 104680 TATTTTTCGTAGCCAAGCTCGATCAACAGTCGATCCGCCACAAATTCGATGTACTCGCAC 104739 || |||| || ||| ||| | |||||||||||| || || |||||||||| | | Sbjct 262880 AGCTTCTCGTTCCCGAGCGCGACAAGCAGTCGATCCGCGACGAACTCGATGTACTGTCGC 262939 Query 104740 ATAGAATGT-GCATTCATGCCCAGCATTGCGACGGGTAAAGCGTTAGTaaaaaaaTCTTT 104798 || || || || |||||||| | || |||| || || |||| || | || |||| Sbjct 262940 AT-GAGGGTCGCGTTCATGCCGATCAAGCCGACAGGCAAGGCGTCCGTCAGGAATTCTTG 262998 Query 104799 CTCGATGTCCACGGCTTC 104816 |||||| || |||||||| Sbjct 262999 CTCGATCTCGACGGCTTC 263016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935800885890