Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq23 141 9e-29
seq4 131 2e-25
seq6 123 2e-23
seq9 104 2e-17
seq20 93.3 4e-14
>seq23
Length=148841
Score = 141 bits (156), Expect = 9e-29
Identities = 502/768 (65%), Gaps = 35/768 (5%)
Strand=Plus/Plus
Query 145736 CTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACG 145795
|||||| |||||||||||||||||| | || ||| ||||| ||||| | ||| | |
Sbjct 121315 CTGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGG 121374
Query 145796 ATAAAACGGTGCA----AG-TCCTGCGCACGCACC-TGCTGCTGGTAGCGGCCCTCTTCT 145849
| ||| | | || | ||| || |||| ||| ||| | ||| ||||| |
Sbjct 121375 A-----CGGCGTACCAGAGCTTCTGTGCGGGCACGGTGC-GCTTGGCGCGACCCTCCTTC 121428
Query 145850 TCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACAC 145909
||||| ||| | ||||||||| ||| || ||||||| ||| || ||||| |
Sbjct 121429 TCGTACTTCTCGAAGAGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCC 121488
Query 145910 TTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCT 145969
| | || || | || | ||| ||||||| | ||| |||||||| || | ||
Sbjct 121489 TCGGCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCG 121548
Query 145970 GGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTT-TCG 146028
|| | ||||||||| | | |||||||||||| | ||||| || ||| | |
Sbjct 121549 GGAATCCACAGCGCAAAGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTG 121608
Query 146029 CTTCAAATTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGC 146088
| | | || | | | ||||| ||||||||||| || | |||| ||||| ||
Sbjct 121609 CGGAGGTCGAGGAACTCGAAA-ATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGC 121667
Query 146089 TCCTTTTCGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCAC 146145
|| || ||| || |||||||| |||| || || ||||||| | ||||| |
Sbjct 121668 GCCAGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAG 121727
Query 146146 CATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCG 146205
|||||| || |||| | | ||||||||| | || | |||| | |||
Sbjct 121728 CATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCG 121787
Query 146206 CACGCAATGAACATTCACGCCGAGACCGCC-GCCGTACTTGGATATAGCGGCGCAGTCGC 146264
| || | | |||| ||||| || || |||||| || ||||| ||
Sbjct 121788 GATATTGTGGATCGAGAGACCGATGCCGCCTGCAGT-CTTGGAGATGA--GCGCACACGT 121844
Query 146265 C--GAGCGTCTCGTAGATGCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCAC 146320
| |||||| ||||||||||| || || ||| |||| || | || ||||||
Sbjct 121845 CTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTC--ATCGTAACGAGGAAGCAC 121902
Query 146321 GAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAAC 146380
|| | | ||||| |||||| || || ||| | |||||| ||||||||||||
Sbjct 121903 GACGAGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAG 121962
Query 146381 ATTTTTCGGCTCAT-CATCCGAT---ACGTTTCGATAGCGTCTTGAATGTCGTCGCCATG 146436
| | |||| ||| ||| |||| ||||| ||| | |||||||||||| ||
Sbjct 121963 ----TACCGCTCCGACATGAGATTGTACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTG 122018
Query 146437 AATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCAC 146484
||||| | |||||||||||||||||||| || || ||||| |||||
Sbjct 122019 GATGCCGACCGCGACGCGCATGAGCATGTGCTGCGGTCGCTCGGCCAC 122066
Score = 102 bits (112), Expect = 8e-17
Identities = 353/547 (65%), Gaps = 4/547 (1%)
Strand=Plus/Plus
Query 144749 GTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGAC 144808
||||| | || ||||||||||| ||||| ||| ||| ||| ||| ||||||
Sbjct 120176 GTGCGGAGGTAATACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAAAAGTGCATCGAC 120235
Query 144809 GTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAATG 144868
|| | | | || || ||| || | | || ||||| || || ||||||
Sbjct 120236 GTGAGCTGCGCCATAGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCAATG 120295
Query 144869 AAAGCGTTGCGGTCGGCGGCCATCTCAATCAT-ACGTT-TGCATTTCATTTCCCAAGCGG 144926
|| ||| |||||||||||| | || || | || || ||| || ||||| |||
Sbjct 120296 AACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTCTGCGAG--ATCTCCCACACGG 120353
Query 144927 TCTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTTGT 144986
||||||| | || || | | ||| || |||||| || ||| || || || ||||
Sbjct 120354 TCTTGTAGATGCGCTTGAGCTCGTCGGGGATGCCGGGAACGTTCTGGATGGAGCCGTTGT 120413
Query 144987 GCGCAAATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCAAGTCGTCAA 145046
|||| | || | |||| ||| || | |||| | || | |||| |
Sbjct 120414 GCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGA 120473
Query 145047 TTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAG 145106
| | | ||||||||||| ||||||||||| | || || || || | ||| |
Sbjct 120474 GGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGG 120533
Query 145107 ACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCA 145166
||||| | || || || | |||||| ||| ||||| || ||||| ||||| ||||
Sbjct 120534 ACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGACGCGGTCGGCA 120593
Query 145167 TGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTAC 145226
| ||| | | || ||||| | |||||||| | ||| | ||||| | |
Sbjct 120594 TCGGCGCGCAGACGAGCGAGTTGCGGATGCCGTGCTGCGCGATCTTCTCCTTCAACTCGG 120653
Query 145227 CCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGC 145286
|||| ||||| || || ||| | |||| ||||| |||||||||||| | ||| | ||
Sbjct 120654 CCCAGTCCCACAGGTCCGTGGGCGTGACGTTCCACAGGTCGTACTGCAAGAGGCCGTGGC 120713
Query 145287 TGGCGGG 145293
| |||||
Sbjct 120714 TCGCGGG 120720
>seq4
Length=1405664
Score = 131 bits (144), Expect = 2e-25
Identities = 110/135 (81%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||||||||| | ||||||||| | || | ||||||||| || || ||||||||||||||
Sbjct 914392 GCCACCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCGCT 914333
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| ||||| |||||| ||||||||||| ||| |||| || ||||||||||| |||||
Sbjct 914332 AAGCGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGG 914273
Query 131127 GATTCCTTCTTTGTC 131141
||| || || |||||
Sbjct 914272 GATGCCCTCCTTGTC 914258
Score = 125 bits (138), Expect = 7e-24
Identities = 108/134 (81%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| ||||| | ||||||||| | || | ||||||||| || || |||||||| |||||
Sbjct 913952 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTG 913893
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| |||||| ||||||||||| ||| |||| || ||||||||||| ||||||
Sbjct 913892 AGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 913833
Query 131128 ATTCCTTCTTTGTC 131141
||||| || |||||
Sbjct 913832 ATTCCCTCCTTGTC 913819
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| ||||| | ||||||||| | || | ||||||||| || || |||||||||||
Sbjct 913635 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 913576
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || |||||| |||||||| || ||| |||| | |||||||||||| |||||
Sbjct 913575 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGA 913516
Query 131128 ATTCCTTCTTTGTC 131141
|| || || |||||
Sbjct 913515 ATGCCCTCCTTGTC 913502
>seq6
Length=1276814
Score = 123 bits (136), Expect = 2e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| |||||||| | || ||| | ||| | || |||||||| || |||||||| |||||
Sbjct 941341 CCTCCGCGCAACCTCAACACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTA 941400
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| |||||| ||||||||||| ||| |||| || ||||||||||| ||||||
Sbjct 941401 AGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 941460
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
||||| || ||||| ||| || ||||| | || | || || | |||||||
Sbjct 941461 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACC 941520
Query 131188 TCGACGGT 131195
|||| |||
Sbjct 941521 TCGAGGGT 941528
Score = 104 bits (114), Expect = 2e-17
Identities = 117/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138
|||||| ||||||||||| ||| |||| || || |||||||| ||||| || || || ||
Sbjct 942149 GTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCCTT 942208
Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198
||| || || ||||| | || | || |||| ||||||| |||| ||| |
Sbjct 942209 GTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTGAT 942268
Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
||| || ||||| || || || |||||||||||||||
Sbjct 942269 GGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATG 942305
>seq9
Length=1185843
Score = 104 bits (114), Expect = 2e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| | ||| || || | || | |||||||||||| || |||||||| ||
Sbjct 462251 CCACCGCGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 462310
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| |||||| ||||||||||| ||| |||| || ||||||||||| || |||
Sbjct 462311 AGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 462370
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162
|| || || ||||| ||| || ||||| |||
Sbjct 462371 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACCTG 462405
>seq20
Length=382848
Score = 93.3 bits (102), Expect = 4e-14
Identities = 116/159 (73%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096
|||||||||||| || ||||||||||| | |||||| |||||| |||||||||||
Sbjct 80936 GGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 80877
Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156
|| |||| | ||||||||||| || ||||| || || ||||| ||| || |||
Sbjct 80876 GGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 80817
Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGT 131195
|| | || | || || | ||||||| |||| |||
Sbjct 80816 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 80778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472012575793920
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