Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq23 141 9e-29 seq4 131 2e-25 seq6 123 2e-23 seq9 104 2e-17 seq20 93.3 4e-14 >seq23 Length=148841 Score = 141 bits (156), Expect = 9e-29 Identities = 502/768 (65%), Gaps = 35/768 (5%) Strand=Plus/Plus Query 145736 CTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACG 145795 |||||| |||||||||||||||||| | || ||| ||||| ||||| | ||| | | Sbjct 121315 CTGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGG 121374 Query 145796 ATAAAACGGTGCA----AG-TCCTGCGCACGCACC-TGCTGCTGGTAGCGGCCCTCTTCT 145849 | ||| | | || | ||| || |||| ||| ||| | ||| ||||| | Sbjct 121375 A-----CGGCGTACCAGAGCTTCTGTGCGGGCACGGTGC-GCTTGGCGCGACCCTCCTTC 121428 Query 145850 TCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACAC 145909 ||||| ||| | ||||||||| ||| || ||||||| ||| || ||||| | Sbjct 121429 TCGTACTTCTCGAAGAGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCC 121488 Query 145910 TTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCT 145969 | | || || | || | ||| ||||||| | ||| |||||||| || | || Sbjct 121489 TCGGCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCG 121548 Query 145970 GGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTT-TCG 146028 || | ||||||||| | | |||||||||||| | ||||| || ||| | | Sbjct 121549 GGAATCCACAGCGCAAAGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTG 121608 Query 146029 CTTCAAATTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGC 146088 | | | || | | | ||||| ||||||||||| || | |||| ||||| || Sbjct 121609 CGGAGGTCGAGGAACTCGAAA-ATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGC 121667 Query 146089 TCCTTTTCGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCAC 146145 || || ||| || |||||||| |||| || || ||||||| | ||||| | Sbjct 121668 GCCAGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAG 121727 Query 146146 CATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCG 146205 |||||| || |||| | | ||||||||| | || | |||| | ||| Sbjct 121728 CATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCG 121787 Query 146206 CACGCAATGAACATTCACGCCGAGACCGCC-GCCGTACTTGGATATAGCGGCGCAGTCGC 146264 | || | | |||| ||||| || || |||||| || ||||| || Sbjct 121788 GATATTGTGGATCGAGAGACCGATGCCGCCTGCAGT-CTTGGAGATGA--GCGCACACGT 121844 Query 146265 C--GAGCGTCTCGTAGATGCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCAC 146320 | |||||| ||||||||||| || || ||| |||| || | || |||||| Sbjct 121845 CTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTC--ATCGTAACGAGGAAGCAC 121902 Query 146321 GAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAAC 146380 || | | ||||| |||||| || || ||| | |||||| |||||||||||| Sbjct 121903 GACGAGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAG 121962 Query 146381 ATTTTTCGGCTCAT-CATCCGAT---ACGTTTCGATAGCGTCTTGAATGTCGTCGCCATG 146436 | | |||| ||| ||| |||| ||||| ||| | |||||||||||| || Sbjct 121963 ----TACCGCTCCGACATGAGATTGTACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTG 122018 Query 146437 AATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCAC 146484 ||||| | |||||||||||||||||||| || || ||||| ||||| Sbjct 122019 GATGCCGACCGCGACGCGCATGAGCATGTGCTGCGGTCGCTCGGCCAC 122066 Score = 102 bits (112), Expect = 8e-17 Identities = 353/547 (65%), Gaps = 4/547 (1%) Strand=Plus/Plus Query 144749 GTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGAC 144808 ||||| | || ||||||||||| ||||| ||| ||| ||| ||| |||||| Sbjct 120176 GTGCGGAGGTAATACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAAAAGTGCATCGAC 120235 Query 144809 GTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAATG 144868 || | | | || || ||| || | | || ||||| || || |||||| Sbjct 120236 GTGAGCTGCGCCATAGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCAATG 120295 Query 144869 AAAGCGTTGCGGTCGGCGGCCATCTCAATCAT-ACGTT-TGCATTTCATTTCCCAAGCGG 144926 || ||| |||||||||||| | || || | || || ||| || ||||| ||| Sbjct 120296 AACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTCTGCGAG--ATCTCCCACACGG 120353 Query 144927 TCTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTTGT 144986 ||||||| | || || | | ||| || |||||| || ||| || || || |||| Sbjct 120354 TCTTGTAGATGCGCTTGAGCTCGTCGGGGATGCCGGGAACGTTCTGGATGGAGCCGTTGT 120413 Query 144987 GCGCAAATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCAAGTCGTCAA 145046 |||| | || | |||| ||| || | |||| | || | |||| | Sbjct 120414 GCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGA 120473 Query 145047 TTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAG 145106 | | | ||||||||||| ||||||||||| | || || || || | ||| | Sbjct 120474 GGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGG 120533 Query 145107 ACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCA 145166 ||||| | || || || | |||||| ||| ||||| || ||||| ||||| |||| Sbjct 120534 ACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGACGCGGTCGGCA 120593 Query 145167 TGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTAC 145226 | ||| | | || ||||| | |||||||| | ||| | ||||| | | Sbjct 120594 TCGGCGCGCAGACGAGCGAGTTGCGGATGCCGTGCTGCGCGATCTTCTCCTTCAACTCGG 120653 Query 145227 CCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGC 145286 |||| ||||| || || ||| | |||| ||||| |||||||||||| | ||| | || Sbjct 120654 CCCAGTCCCACAGGTCCGTGGGCGTGACGTTCCACAGGTCGTACTGCAAGAGGCCGTGGC 120713 Query 145287 TGGCGGG 145293 | ||||| Sbjct 120714 TCGCGGG 120720 >seq4 Length=1405664 Score = 131 bits (144), Expect = 2e-25 Identities = 110/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | ||||||||| | || | ||||||||| || || |||||||||||||| Sbjct 914392 GCCACCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCGCT 914333 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| ||||||||||| ||| |||| || ||||||||||| ||||| Sbjct 914332 AAGCGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGG 914273 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 914272 GATGCCCTCCTTGTC 914258 Score = 125 bits (138), Expect = 7e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||||||| | || | ||||||||| || || |||||||| ||||| Sbjct 913952 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTG 913893 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| || ||||||||||| |||||| Sbjct 913892 AGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 913833 Query 131128 ATTCCTTCTTTGTC 131141 ||||| || ||||| Sbjct 913832 ATTCCCTCCTTGTC 913819 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||||||| | || | ||||||||| || || ||||||||||| Sbjct 913635 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 913576 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| |||| | |||||||||||| ||||| Sbjct 913575 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGA 913516 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 913515 ATGCCCTCCTTGTC 913502 >seq6 Length=1276814 Score = 123 bits (136), Expect = 2e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || |||||||| | || ||| | ||| | || |||||||| || |||||||| ||||| Sbjct 941341 CCTCCGCGCAACCTCAACACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTA 941400 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| || ||||||||||| |||||| Sbjct 941401 AGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 941460 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | || | || || | ||||||| Sbjct 941461 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACC 941520 Query 131188 TCGACGGT 131195 |||| ||| Sbjct 941521 TCGAGGGT 941528 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 |||||| ||||||||||| ||| |||| || || |||||||| ||||| || || || || Sbjct 942149 GTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCCTT 942208 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| || || ||||| | || | || |||| ||||||| |||| ||| | Sbjct 942209 GTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTGAT 942268 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| || ||||| || || || ||||||||||||||| Sbjct 942269 GGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATG 942305 >seq9 Length=1185843 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | || | |||||||||||| || |||||||| || Sbjct 462251 CCACCGCGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 462310 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| || ||||||||||| || ||| Sbjct 462311 AGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 462370 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 || || || ||||| ||| || ||||| ||| Sbjct 462371 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACCTG 462405 >seq20 Length=382848 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 |||||||||||| || ||||||||||| | |||||| |||||| ||||||||||| Sbjct 80936 GGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 80877 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || |||| | ||||||||||| || ||||| || || ||||| ||| || ||| Sbjct 80876 GGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 80817 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGT 131195 || | || | || || | ||||||| |||| ||| Sbjct 80816 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 80778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012575793920