Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq23 116 5e-21
seq4 93.3 5e-14
>seq23
Length=148841
Score = 116 bits (128), Expect = 5e-21
Identities = 364/556 (65%), Gaps = 16/556 (3%)
Strand=Plus/Plus
Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111
||| || |||| | || || || | ||| ||||| || |||||||| || || | ||
Sbjct 121509 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGCAAAGAA 121568
Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171
| || | | | ||||| || || ||||| || ||||||||| | |
Sbjct 121569 CAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 121628
Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231
||| || | |||||||| || | ||| ||||| | | ||||| || ||||| |||||
Sbjct 121629 AATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTTGCCTCC 121688
Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291
||| || | ||| | || ||||| || || || | | ||| || || || || || ||
Sbjct 121689 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 121748
Query 63292 TGTA-CCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63350
||| || || || || | ||| || || | || || ||||| || || ||||
Sbjct 121749 -GTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATTGTGGATCGAGAGAC 121807
Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCC 63409
| || || ||||| | || ||||| | || || ||| || | ||| || |||||||||
Sbjct 121808 CGATGCCGCCTGCAGTCTTGGAGATGAGCGCACA-CGTCTTGAGCGTGTCGTAGATGCCC 121866
Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAA--ACAGCTAGACATTTGGTGACGACTAG 63467
|| || || ||| |||| ||| || || || | ||| | || || | |
Sbjct 121867 TCGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--G 121924
Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527
| || || || || | || || || ||||| ||||| | || || | |||||||
Sbjct 121925 TGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGATTGT 121984
Query 63528 ACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATT 63583
||||||| || || ||| || || || | |||| || || ||||| |||||
Sbjct 121985 ACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATG 122040
Query 63584 AACATGTGCTGAGGTC 63599
| ||||||||| ||||
Sbjct 122041 AGCATGTGCTGCGGTC 122056
>seq4
Length=1405664
Score = 93.3 bits (102), Expect = 5e-14
Identities = 118/162 (73%), Gaps = 3/162 (2%)
Strand=Plus/Plus
Query 32708 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 32767
||| || |||||||||||||| | ||| ||||| || ||||| || |||||||| |||||
Sbjct 862394 GGAGAAAGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAATGA 862453
Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 32827
|| || ||||| || || || || || ||||| || | || | ||| || | |||
Sbjct 862454 GCCGGAGAAGAAGATGCCCTCGACGGCGGCAAACGCGACCAGGCGCTCGCCGAAGACGGA 862513
Query 32828 GCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTT 32866
|| ||| | ||||| | | ||||| |||||||||||
Sbjct 862514 GCGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 862555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633631699024800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |